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Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16943415	C-T	HET	INTERGENIC
SBS	Chr1	32239957	G-T	HET	INTERGENIC
SBS	Chr1	33608083	G-A	HET	INTERGENIC
SBS	Chr2	13023737	A-T	HOMO	INTERGENIC
SBS	Chr2	30718322	G-A	HET	INTERGENIC
SBS	Chr3	16784580	G-A	HOMO	INTERGENIC
SBS	Chr3	34896823	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g61540
SBS	Chr4	5019976	G-T	HET	INTERGENIC
SBS	Chr4	16846072	C-A	HET	INTRON
SBS	Chr4	24002499	A-C	HOMO	INTERGENIC
SBS	Chr4	27441010	G-T	HOMO	INTERGENIC
SBS	Chr4	30116607	C-T	HOMO	INTERGENIC
SBS	Chr4	33072517	T-A	HOMO	INTRON
SBS	Chr5	1880393	A-T	HOMO	INTERGENIC
SBS	Chr5	7022384	C-T	HET	INTERGENIC
SBS	Chr5	9802523	C-G	HET	INTRON
SBS	Chr5	10161596	G-A	HET	INTERGENIC
SBS	Chr5	12166146	C-T	HET	INTERGENIC
SBS	Chr5	14408174	C-T	HET	STOP_GAINED	LOC_Os05g24880
SBS	Chr5	18276973	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g31420
SBS	Chr6	15389247	C-A	HET	SYNONYMOUS_CODING
SBS	Chr7	10903865	T-C	HET	INTERGENIC
SBS	Chr8	8359394	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g13950
SBS	Chr8	12656279	T-C	HET	INTERGENIC
SBS	Chr8	17261576	C-T	HET	INTERGENIC
SBS	Chr9	8546494	G-A	HET	INTERGENIC
SBS	Chr9	8891699	A-G	HET	INTERGENIC
SBS	Chr9	16121272	T-G	HET	INTERGENIC
SBS	Chr9	17595796	A-T	HET	INTERGENIC
SBS	Chr10	6039675	A-G	HET	INTERGENIC
SBS	Chr11	14100823	T-C	HET	INTERGENIC
SBS	Chr11	20783228	T-A	HET	INTERGENIC
SBS	Chr11	21919988	C-T	HET	INTERGENIC
SBS	Chr12	23066491	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g37570

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	10599027	10599033	6	LOC_Os10g20930
Deletion	Chr12	11399818	11399821	3
Deletion	Chr4	12081986	12081989	3
Deletion	Chr4	12125001	12137000	11999	LOC_Os04g23240
Deletion	Chr9	16800632	16800635	3
Deletion	Chr1	16897668	16897835	167
Deletion	Chr6	17047953	17047955	2
Deletion	Chr10	17952818	17952819	1
Deletion	Chr1	18337542	18337548	6
Deletion	Chr6	18377492	18377504	12
Deletion	Chr8	19009286	19009300	14
Deletion	Chr10	20967020	20967022	2
Deletion	Chr6	21000304	21000305	1
Deletion	Chr3	22523240	22523249	9
Deletion	Chr2	23815936	23815942	6
Deletion	Chr2	24106540	24106541	1
Deletion	Chr8	24923957	24923962	5
Deletion	Chr2	27226237	27226243	6
Deletion	Chr4	29466001	29485000	18999	3
Deletion	Chr1	30043714	30043728	14
Deletion	Chr1	40999246	40999247	1

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr3	19500523	19500523	1
Insertion	Chr4	388254	388254	1
Insertion	Chr5	16457952	16457953	2
Insertion	Chr1	5943189	5943194	6
Insertion	Chr4	6391764	6391771	8
Insertion	Chr8	25048108	25048115	8
Insertion	Chr11	15036076	15036076	1
Insertion	Chr11	26225483	26225484	2
Insertion	Chr12	14486112	14486127	16

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	13291100	13322928	LOC_Os04g23280
Inversion	Chr9	18362673	18653288
Inversion	Chr9	18362676	18653321

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	4255084	Chr4	3581408
Translocation	Chr5	11343535	Chr3	18507930

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