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Mutant Information

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10985756	G-T	HOMO	INTERGENIC
SBS	Chr1	22749028	A-T	HET	INTERGENIC
SBS	Chr1	32080844	G-A	HET	INTRON
SBS	Chr1	33323751	C-T	HET	INTERGENIC
SBS	Chr1	33323762	G-T	HET	INTERGENIC
SBS	Chr1	39798664	T-A	HET	START_GAINED
SBS	Chr1	42622671	A-C	HET	INTRON
SBS	Chr10	6371448	C-A	HET	INTERGENIC
SBS	Chr11	11270396	C-T	HET	INTERGENIC
SBS	Chr11	14061845	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g24650
SBS	Chr11	15932895	A-C	HET	INTRON
SBS	Chr11	19097742	G-A	HOMO	INTRON
SBS	Chr11	23816458	G-A	HOMO	INTERGENIC
SBS	Chr12	13507526	A-T	HOMO	INTERGENIC
SBS	Chr12	22032871	C-T	HET	INTERGENIC
SBS	Chr12	3144309	T-C	HET	INTERGENIC
SBS	Chr2	13391062	G-A	HET	SYNONYMOUS_CODING
SBS	Chr2	31244506	C-T	HOMO	INTERGENIC
SBS	Chr3	35019725	T-A	HET	INTRON
SBS	Chr3	35019728	T-G	HET	INTRON
SBS	Chr4	1737413	G-A	HET	INTRON
SBS	Chr5	28575974	C-T	HET	INTERGENIC
SBS	Chr6	21533960	A-T	HET	INTERGENIC
SBS	Chr7	105686	C-T	HET	INTERGENIC
SBS	Chr7	20866230	C-T	HET	INTERGENIC
SBS	Chr7	2269115	G-A	HET	INTERGENIC
SBS	Chr7	7874066	C-G	HET	INTRON
SBS	Chr7	9739847	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g16600
SBS	Chr8	22052305	T-A	HET	INTERGENIC
SBS	Chr8	24598577	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g38920
SBS	Chr8	26421410	C-T	HET	INTRON
SBS	Chr8	26737365	G-A	HET	INTERGENIC
SBS	Chr8	8611477	A-T	HET	INTERGENIC
SBS	Chr9	15229798	C-T	HET	INTERGENIC
SBS	Chr9	8306272	C-A	HET	INTERGENIC

Deletions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	2636899	2636900	1
Deletion	Chr12	3202022	3202034	12	LOC_Os12g06610
Deletion	Chr7	4539115	4539117	2
Deletion	Chr6	4954847	4954849	2
Deletion	Chr3	5330457	5330458	1
Deletion	Chr10	5491082	5491083	1
Deletion	Chr11	8275507	8275512	5
Deletion	Chr8	8625693	8625702	9	LOC_Os08g14380
Deletion	Chr1	8836230	8836264	34	LOC_Os01g15709
Deletion	Chr8	9099344	9099345	1	LOC_Os08g15050
Deletion	Chr4	9865346	9865348	2	LOC_Os04g17940
Deletion	Chr4	13656803	13656808	5
Deletion	Chr4	15098265	15098266	1
Deletion	Chr7	16287285	16287289	4
Deletion	Chr2	16948324	16948328	4
Deletion	Chr8	17868834	17868836	2
Deletion	Chr4	18526251	18526252	1
Deletion	Chr3	20213756	20213757	1
Deletion	Chr6	21268955	21268956	1
Deletion	Chr1	22749637	22749638	1
Deletion	Chr11	23250292	23250303	11	LOC_Os11g39050
Deletion	Chr12	26026839	26026841	2	LOC_Os12g41970
Deletion	Chr8	26255832	26255844	12	LOC_Os08g41560
Deletion	Chr8	27181506	27181517	11
Deletion	Chr7	28263198	28263200	2
Deletion	Chr5	29873966	29873967	1
Deletion	Chr1	32934332	32934333	1

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	20763484	20763484	1
Insertion	Chr4	28151654	28151655	2
Insertion	Chr5	20704701	20704722	22
Insertion	Chr7	4279975	4279976	2

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	7765123	7944366
Inversion	Chr9	7765133	7944366
Inversion	Chr1	30929517	31435102	LOC_Os01g54640
Inversion	Chr1	30929528	31761523
Inversion	Chr1	31327182	31761514
Inversion	Chr1	31327188	31327739

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	6311480	Chr7	25640371
Translocation	Chr8	6428781	Chr7	25640365

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