Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14326248	C-T	HET	SYNONYMOUS_CODING
SBS	Chr1	32138655	A-T	HOMO	UTR_5_PRIME
SBS	Chr1	37563611	G-A	HET	SYNONYMOUS_CODING
SBS	Chr10	12426723	T-C	HET	INTERGENIC
SBS	Chr10	15972716	G-A	HET	INTERGENIC
SBS	Chr11	10478090	C-T	HET	INTERGENIC
SBS	Chr11	134588	C-T	HET	INTERGENIC
SBS	Chr11	15422684	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g26850
SBS	Chr12	25729736	A-G	HOMO	SYNONYMOUS_CODING
SBS	Chr12	4278807	A-G	HOMO	INTERGENIC
SBS	Chr2	1683631	A-G	HET	INTRON
SBS	Chr2	25835136	G-T	HET	INTERGENIC
SBS	Chr2	4724405	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g09200
SBS	Chr3	20770885	T-G	HOMO	INTERGENIC
SBS	Chr4	11585015	G-A	HOMO	INTERGENIC
SBS	Chr4	13680700	C-T	HET	INTERGENIC
SBS	Chr4	25230616	T-A	HET	INTERGENIC
SBS	Chr4	28133817	T-A	HOMO	SPLICE_SITE_REGION
SBS	Chr4	28948694	C-T	HET	INTERGENIC
SBS	Chr5	10019113	C-T	HET	STOP_GAINED	LOC_Os05g17450
SBS	Chr5	12145728	T-G	HOMO	INTRON
SBS	Chr5	15195140	A-C	HOMO	INTERGENIC
SBS	Chr5	4528043	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr5	6671922	C-G	HOMO	UTR_5_PRIME
SBS	Chr5	9370687	G-A	HOMO	INTERGENIC
SBS	Chr6	12371507	G-A	HET	INTERGENIC
SBS	Chr6	15503080	T-C	HET	INTERGENIC
SBS	Chr6	19998217	G-A	HET	INTERGENIC
SBS	Chr6	6769991	A-T	HOMO	INTRON
SBS	Chr7	10252757	A-C	HOMO	INTERGENIC
SBS	Chr8	1002994	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g02480
SBS	Chr8	12702099	T-G	HET	SYNONYMOUS_CODING
SBS	Chr8	16273203	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g26760
SBS	Chr8	7270731	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g12340
SBS	Chr9	16102428	A-T	HOMO	UTR_3_PRIME

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	1673586	1673591	5
Deletion	Chr10	2002231	2002232	1
Deletion	Chr9	2373034	2373035	1
Deletion	Chr6	7413960	7413963	3
Deletion	Chr10	8239411	8239413	2
Deletion	Chr9	8662882	8662886	4
Deletion	Chr7	8946729	8946732	3
Deletion	Chr2	9243408	9243411	3
Deletion	Chr6	9525479	9525480	1
Deletion	Chr4	10158058	10158064	6
Deletion	Chr9	13045786	13045804	18
Deletion	Chr5	13135595	13135608	13
Deletion	Chr3	14757940	14757972	32
Deletion	Chr7	16246001	16274000	27999	5
Deletion	Chr2	17124345	17124354	9
Deletion	Chr12	20192011	20192015	4
Deletion	Chr7	20204717	20204730	13
Deletion	Chr10	21326740	21326741	1
Deletion	Chr1	23325070	23325071	1	LOC_Os01g41200
Deletion	Chr1	29600874	29600879	5

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	10559228	10559303	76
Insertion	Chr12	20221764	20221785	22
Insertion	Chr12	4543496	4543497	2
Insertion	Chr3	16987269	16987270	2
Insertion	Chr4	8368709	8368709	1
Insertion	Chr5	1634633	1634633	1
Insertion	Chr7	1873535	1873542	8

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	27018961	27734139	LOC_Os02g44590
Inversion	Chr2	27018980	27734144	LOC_Os02g44590
Inversion	Chr3	32982321	33238273	LOC_Os03g57900

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr2	3079750	Chr1	23581007
Translocation	Chr12	10629458	Chr9	16923103
Translocation	Chr5	13312258	Chr3	33238268	LOC_Os05g23320
Translocation	Chr5	13316308	Chr3	32982314	LOC_Os03g57900

Main menu