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Mutant Information

Variant Information

Single base substitutions: 23

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11498828	C-T	HET	INTERGENIC
SBS	Chr1	15944334	G-A	HET	INTERGENIC
SBS	Chr2	1361122	A-C	HET	INTRON
SBS	Chr2	4195975	C-T	HET	UTR_3_PRIME
SBS	Chr2	12577496	C-T	HET	INTRON
SBS	Chr3	2300060	G-A	HET	INTERGENIC
SBS	Chr3	7521223	G-A	HET	UTR_5_PRIME
SBS	Chr3	14519829	A-T	HET	INTERGENIC
SBS	Chr5	2379974	C-T	HET	INTRON
SBS	Chr5	25873715	A-T	HOMO	INTERGENIC
SBS	Chr5	27011247	A-T	HOMO	INTERGENIC
SBS	Chr5	28602376	G-T	HOMO	INTRON
SBS	Chr7	8578125	C-T	HOMO	INTRON
SBS	Chr7	9915970	T-A	HET	INTRON
SBS	Chr7	28762089	G-T	HET	INTERGENIC
SBS	Chr8	7040165	G-A	HET	INTERGENIC
SBS	Chr9	4237917	C-T	HOMO	INTRON
SBS	Chr9	5022763	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g09370
SBS	Chr10	1109761	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g02780
SBS	Chr10	18653337	T-A	HOMO	INTERGENIC
SBS	Chr12	3299117	G-A	HET	SYNONYMOUS_CODING
SBS	Chr12	3299121	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g06800
SBS	Chr12	4931075	A-T	HET	INTERGENIC

Deletions: 32

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	1259504	1259923	419
Deletion	Chr8	2324939	2324945	6
Deletion	Chr2	3942985	3942986	1	LOC_Os02g07620
Deletion	Chr3	4013335	4013336	1
Deletion	Chr1	5996883	5996884	1
Deletion	Chr8	6369051	6369052	1
Deletion	Chr6	8678877	8679329	452
Deletion	Chr7	9454061	9454062	1
Deletion	Chr1	9514665	9514667	2
Deletion	Chr4	10014698	10014724	26
Deletion	Chr10	10458355	10458356	1
Deletion	Chr2	10905623	10905714	91
Deletion	Chr6	12151612	12151613	1	LOC_Os06g21030
Deletion	Chr7	12201025	12201026	1
Deletion	Chr12	12642559	12642560	1	LOC_Os12g22390
Deletion	Chr6	14026793	14026978	185
Deletion	Chr11	16183465	16183466	1
Deletion	Chr3	16769218	16769219	1
Deletion	Chr4	18726926	18726938	12
Deletion	Chr2	19423001	19597000	173999	25
Deletion	Chr1	19990924	19990938	14
Deletion	Chr5	20855596	20855598	2
Deletion	Chr3	22313001	22321000	7999	LOC_Os04g01520
Deletion	Chr10	22719432	22719438	6
Deletion	Chr1	23425282	23425283	1
Deletion	Chr5	25137321	25137336	15	LOC_Os05g43220
Deletion	Chr8	25491659	25491660	1
Deletion	Chr1	25663789	25663790	1
Deletion	Chr3	26086986	26087021	35
Deletion	Chr12	26331683	26331688	5
Deletion	Chr1	36978345	36978346	1
Deletion	Chr1	41048067	41048068	1

Insertions: 40

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	16763248	16763250	3	LOC_Os01g29900
Insertion	Chr2	16307687	16307705	19
Insertion	Chr3	9193929	9193929	1
Insertion	Chr3	9211045	9211086	42
Insertion	Chr3	16642693	16642696	4
Insertion	Chr3	23701880	23701881	2
Insertion	Chr4	12265757	12265757	1
Insertion	Chr4	14959691	14959692	2
Insertion	Chr4	19747660	19747660	1	LOC_Os04g32750
Insertion	Chr5	3018536	3018536	1
Insertion	Chr6	9003101	9003102	2
Insertion	Chr6	17372718	17372718	1
Insertion	Chr7	6460545	6460545	1	LOC_Os07g11680
Insertion	Chr7	10070514	10070532	19
Insertion	Chr7	16277274	16277281	8
Insertion	Chr7	16402940	16402941	2
Insertion	Chr7	19560698	19560701	4
Insertion	Chr7	19803400	19803400	1
Insertion	Chr8	1298824	1298824	1
Insertion	Chr8	1547800	1547800	1
Insertion	Chr8	13660910	13660914	5
Insertion	Chr8	15375408	15375408	1
Insertion	Chr8	15533155	15533156	2
Insertion	Chr8	17515866	17515869	4
Insertion	Chr9	1449740	1449743	4
Insertion	Chr10	450366	450418	53
Insertion	Chr10	4013843	4013843	1	LOC_Os10g07530
Insertion	Chr10	5134468	5134468	1
Insertion	Chr10	6963763	6963765	3
Insertion	Chr10	7772907	7772927	21
Insertion	Chr10	13316650	13316650	1
Insertion	Chr10	17790740	17790763	24
Insertion	Chr11	16995725	16995750	26
Insertion	Chr11	22777172	22777173	2
Insertion	Chr11	26982523	26982523	1
Insertion	Chr12	2006830	2006830	1
Insertion	Chr12	5786691	5786703	13
Insertion	Chr12	5816255	5816256	2
Insertion	Chr12	15787806	15787806	1
Insertion	Chr12	16233976	16233976	1

No Inversion

Translocations: 18

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	465084	Chr8	8728594
Translocation	Chr6	633974	Chr5	25587829
Translocation	Chr7	2633359	Chr5	18877114
Translocation	Chr7	2686190	Chr1	5672315
Translocation	Chr7	3105012	Chr1	10688312
Translocation	Chr12	4863090	Chr2	13966221	2
Translocation	Chr9	5042896	Chr7	14449105	LOC_Os09g09390
Translocation	Chr8	6539077	Chr4	3093641
Translocation	Chr9	14444452	Chr8	28418942
Translocation	Chr8	15226188	Chr1	2638269
Translocation	Chr7	18166056	Chr2	24389192
Translocation	Chr5	18877115	Chr1	5669581	LOC_Os01g10610
Translocation	Chr11	21374587	Chr1	5670917
Translocation	Chr11	21374600	Chr1	5670272
Translocation	Chr7	22010739	Chr3	8427516
Translocation	Chr5	22455245	Chr1	5672312
Translocation	Chr5	22455246	Chr1	5670923
Translocation	Chr3	34394792	Chr2	31696390	LOC_Os03g60509

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