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Mutant Information

Mutant Name	FN3273-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3273-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 50

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2712418	A-T	HET	INTERGENIC
SBS	Chr1	6339755	C-A	HET	INTERGENIC
SBS	Chr1	8184425	T-A	HET	INTERGENIC
SBS	Chr1	15221268	G-A	HET	INTRON
SBS	Chr1	28431838	G-A	HET	INTERGENIC
SBS	Chr1	43019680	A-T	HET	INTERGENIC
SBS	Chr2	13034551	G-T	HET	INTERGENIC
SBS	Chr2	13822486	G-A	HET	INTERGENIC
SBS	Chr3	3781573	C-T	HET	INTERGENIC
SBS	Chr3	3781575	C-T	HET	INTERGENIC
SBS	Chr3	8836244	A-T	HOMO	INTERGENIC
SBS	Chr3	14053017	C-T	HET	INTERGENIC
SBS	Chr3	14072698	A-T	HET	INTERGENIC
SBS	Chr3	16313401	T-C	HET	INTERGENIC
SBS	Chr3	28740507	C-T	HOMO	INTERGENIC
SBS	Chr4	2851389	T-A	HOMO	INTRON
SBS	Chr4	3884189	C-T	HET	INTERGENIC
SBS	Chr4	3925586	A-G	HOMO	INTRON
SBS	Chr4	11435063	C-T	HET	INTERGENIC
SBS	Chr4	16627292	A-C	HOMO	SYNONYMOUS_CODING
SBS	Chr4	28803416	T-C	HET	INTERGENIC
SBS	Chr4	29218264	T-C	HET	INTERGENIC
SBS	Chr5	1991885	A-C	HET	INTERGENIC
SBS	Chr5	6115705	G-A	HET	START_LOST	LOC_Os05g10960
SBS	Chr5	6561162	A-C	HET	INTERGENIC
SBS	Chr5	17097376	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g29110
SBS	Chr5	23297257	C-A	HET	INTRON
SBS	Chr5	23297258	T-C	HET	INTRON
SBS	Chr6	1168549	A-C	HET	INTERGENIC
SBS	Chr6	3130568	A-G	HET	INTRON
SBS	Chr6	4834062	T-G	HET	INTRON
SBS	Chr6	7957776	T-C	HET	INTERGENIC
SBS	Chr6	12648444	C-T	HOMO	INTERGENIC
SBS	Chr6	15196808	G-C	HOMO	INTRON
SBS	Chr6	25960939	T-C	HET	SPLICE_SITE_REGION
SBS	Chr6	26147962	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os06g43490
SBS	Chr6	29438204	G-T	HET	INTRON
SBS	Chr6	29438205	C-T	HET	INTRON
SBS	Chr6	30264351	G-T	HET	INTRON
SBS	Chr6	30922146	A-G	HET	INTERGENIC
SBS	Chr8	4035245	G-A	HOMO	INTERGENIC
SBS	Chr8	19463134	G-A	HOMO	INTERGENIC
SBS	Chr8	23145748	C-G	HET	INTERGENIC
SBS	Chr9	12407335	C-T	HET	INTERGENIC
SBS	Chr10	21419211	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g39980
SBS	Chr11	10327422	A-G	HET	INTERGENIC
SBS	Chr11	23105304	A-T	HET	INTERGENIC
SBS	Chr12	570445	G-T	HOMO	INTRON
SBS	Chr12	7306912	C-G	HOMO	INTRON
SBS	Chr12	26260372	T-A	HET	INTERGENIC

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	863538	863545	7
Deletion	Chr7	2769953	2769965	12
Deletion	Chr3	3151182	3151186	4
Deletion	Chr3	3720001	3748000	27999	8
Deletion	Chr10	5037274	5037279	5
Deletion	Chr9	6748342	6748343	1
Deletion	Chr9	9932392	9932393	1
Deletion	Chr11	10774364	10774366	2
Deletion	Chr9	11590952	11590966	14
Deletion	Chr8	11657700	11657702	2
Deletion	Chr1	11678971	11678979	8	LOC_Os01g20900
Deletion	Chr4	13055776	13055787	11
Deletion	Chr5	14519953	14519970	17
Deletion	Chr2	14551389	14551393	4
Deletion	Chr11	15127872	15127880	8
Deletion	Chr4	20538288	20538310	22
Deletion	Chr10	22881670	22881671	1
Deletion	Chr3	25969958	25969963	5
Deletion	Chr6	30264001	30384000	119999	22
Deletion	Chr1	41252001	41268000	15999	LOC_Os02g03670

Insertions: 10

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr6	13477689	13477690	2
Insertion	Chr2	6710927	6710934	8
Insertion	Chr4	2102917	2102918	2
Insertion	Chr4	6686351	6686399	49
Insertion	Chr6	18292185	18292185	1
Insertion	Chr7	12349220	12349284	65
Insertion	Chr9	18370340	18370368	29
Insertion	Chr10	1603822	1603843	22
Insertion	Chr11	3880774	3880782	9
Insertion	Chr11	14258975	14258982	8

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	24435934	24436274
Inversion	Chr7	25273035	25304847	LOC_Os07g42280
Inversion	Chr7	25273199	25304854	LOC_Os07g42280
Inversion	Chr11	25496717	26270317	2

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	17145726	Chr1	2709755	LOC_Os10g32740
Translocation	Chr10	17146920	Chr1	2709752
Translocation	Chr9	20939578	Chr2	10370631	LOC_Os09g36280
Translocation	Chr9	20939584	Chr2	10366212	LOC_Os09g36280
Translocation	Chr11	26270324	Chr1	7608786	LOC_Os11g43520

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