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Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17368713	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g31730
SBS	Chr1	1860056	A-G	HET	INTERGENIC
SBS	Chr10	21520687	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g40200
SBS	Chr10	568560	C-T	HET	INTRON
SBS	Chr11	19456129	A-C	HOMO	INTERGENIC
SBS	Chr2	15624834	T-C	HET	INTRON
SBS	Chr2	20084342	T-A	HET	INTERGENIC
SBS	Chr2	22521100	T-A	HET	INTERGENIC
SBS	Chr2	31384295	G-A	HOMO	INTERGENIC
SBS	Chr2	31644143	A-G	HET	INTERGENIC
SBS	Chr2	3301418	G-A	HOMO	INTRON
SBS	Chr2	3788613	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g07340
SBS	Chr2	5158497	G-A	HET	SYNONYMOUS_CODING
SBS	Chr3	24286855	C-T	HET	INTERGENIC
SBS	Chr4	11986050	C-G	HET	INTERGENIC
SBS	Chr4	19167980	C-T	HOMO	INTERGENIC
SBS	Chr4	19228575	C-G	HOMO	INTRON
SBS	Chr4	2527979	A-T	HOMO	INTRON
SBS	Chr4	2527980	A-T	HOMO	INTRON
SBS	Chr4	2527981	G-A	HOMO	INTRON
SBS	Chr4	770474	C-G	HOMO	INTRON
SBS	Chr5	11124933	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g19170
SBS	Chr5	29772638	G-A	HET	INTERGENIC
SBS	Chr6	12457721	C-T	HET	INTRON
SBS	Chr6	17792625	T-C	HOMO	INTERGENIC
SBS	Chr7	19053565	A-G	HOMO	INTERGENIC
SBS	Chr7	28416912	C-T	HOMO	INTERGENIC
SBS	Chr8	22811119	C-T	HET	INTRON
SBS	Chr8	24787649	G-T	HET	INTERGENIC
SBS	Chr8	26031775	A-T	HET	SYNONYMOUS_CODING
SBS	Chr8	27912843	A-G	HET	INTERGENIC
SBS	Chr9	10412992	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g17020
SBS	Chr9	1787124	C-T	HET	INTERGENIC
SBS	Chr9	8808152	C-A	HET	INTERGENIC

Deletions: 36

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	1213350	1213358	8
Deletion	Chr1	2312655	2312656	1
Deletion	Chr4	3017973	3017993	20
Deletion	Chr6	3500139	3500140	1
Deletion	Chr2	4468463	4468464	1
Deletion	Chr10	4567032	4567033	1
Deletion	Chr8	4836360	4836361	1	LOC_Os08g08390
Deletion	Chr4	5173069	5173071	2
Deletion	Chr3	6188480	6188481	1
Deletion	Chr7	6649414	6649415	1
Deletion	Chr1	6746656	6746657	1
Deletion	Chr10	7611102	7611113	11
Deletion	Chr10	8111341	8111342	1
Deletion	Chr8	9587203	9587204	1
Deletion	Chr2	11928133	11928157	24	LOC_Os02g20260
Deletion	Chr11	12595172	12595173	1
Deletion	Chr6	12788383	12788401	18
Deletion	Chr1	13014312	13014314	2
Deletion	Chr4	13826341	13826400	59
Deletion	Chr2	14298883	14298884	1
Deletion	Chr1	15873629	15873630	1
Deletion	Chr6	17655124	17655125	1
Deletion	Chr3	18125984	18125988	4
Deletion	Chr4	18345001	18361000	15999	2
Deletion	Chr7	19351276	19351277	1
Deletion	Chr3	19648163	19648164	1	LOC_Os03g35440
Deletion	Chr9	20644019	20644020	1
Deletion	Chr2	22703043	22703046	3	LOC_Os02g37620
Deletion	Chr3	23758350	23758351	1
Deletion	Chr5	25368749	25368750	1	LOC_Os05g43630
Deletion	Chr4	25623882	25623883	1
Deletion	Chr3	27218886	27218887	1
Deletion	Chr1	33082583	33082643	60	LOC_Os01g57250
Deletion	Chr1	33576628	33576629	1
Deletion	Chr1	38240636	38240637	1
Deletion	Chr1	42889149	42889163	14

Insertions: 36

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	13045379	13045379	1
Insertion	Chr1	15873706	15873706	1
Insertion	Chr1	16333002	16333003	2
Insertion	Chr1	17722031	17722031	1
Insertion	Chr1	35696825	35696825	1
Insertion	Chr1	42458741	42458802	62
Insertion	Chr1	5463165	5463234	70
Insertion	Chr10	9678466	9678467	2
Insertion	Chr12	11016854	11016854	1
Insertion	Chr12	16122231	16122309	79
Insertion	Chr2	9175078	9175099	22
Insertion	Chr3	17916083	17916112	30	LOC_Os03g31440
Insertion	Chr3	21387216	21387216	1	LOC_Os03g38530
Insertion	Chr3	29762039	29762040	2
Insertion	Chr3	8317499	8317499	1
Insertion	Chr4	15028789	15028789	1
Insertion	Chr4	17209076	17209076	1
Insertion	Chr4	25689675	25689675	1
Insertion	Chr4	29551237	29551296	60
Insertion	Chr4	3358877	3358877	1	LOC_Os04g06400
Insertion	Chr4	3856352	3856352	1
Insertion	Chr4	9531464	9531464	1
Insertion	Chr5	11531640	11531640	1
Insertion	Chr5	12293147	12293147	1
Insertion	Chr5	1633003	1633003	1
Insertion	Chr5	17914027	17914030	4
Insertion	Chr7	12277170	12277170	1
Insertion	Chr7	27147505	27147527	23
Insertion	Chr7	5301291	5301310	20
Insertion	Chr7	7658666	7658674	9
Insertion	Chr7	8090811	8090811	1
Insertion	Chr8	15841204	15841228	25
Insertion	Chr8	3980916	3980917	2
Insertion	Chr8	5192175	5192179	5
Insertion	Chr8	6470351	6470351	1
Insertion	Chr8	9587328	9587328	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	16106541	16413896

Translocations: 15

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	5127070	Chr3	13468766	2
Translocation	Chr8	5192093	Chr7	4602054
Translocation	Chr7	8261480	Chr3	18185031
Translocation	Chr6	10024194	Chr1	27979509	LOC_Os01g48780
Translocation	Chr12	10628773	Chr6	17675288
Translocation	Chr11	12870951	Chr6	16413903
Translocation	Chr11	12871588	Chr5	23707961	2
Translocation	Chr6	16106836	Chr5	23761114
Translocation	Chr12	16650801	Chr5	9483386	2
Translocation	Chr9	21402633	Chr6	16106831
Translocation	Chr9	21402638	Chr6	16106542
Translocation	Chr6	21506617	Chr2	12241556
Translocation	Chr4	23938478	Chr3	5773004
Translocation	Chr3	24678256	Chr2	9611225
Translocation	Chr11	25115619	Chr5	26317109

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