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Mutant Information

Mutant Name	FN3278-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3278-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12082437	C-T	HET	INTERGENIC
SBS	Chr1	12082438	T-A	HET	INTERGENIC
SBS	Chr1	29877930	A-G	HOMO	INTERGENIC
SBS	Chr2	13615633	T-G	HET	INTERGENIC
SBS	Chr2	21073669	C-T	HOMO	INTERGENIC
SBS	Chr3	11194435	G-A	HOMO	INTERGENIC
SBS	Chr3	29311751	G-A	HET	INTERGENIC
SBS	Chr4	2580464	T-G	HET	INTERGENIC
SBS	Chr5	789896	C-T	HET	SYNONYMOUS_CODING
SBS	Chr5	1722423	G-A	HET	INTERGENIC
SBS	Chr5	12398655	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g21090
SBS	Chr6	4204105	G-A	HET	INTERGENIC
SBS	Chr6	6572762	A-T	HET	INTERGENIC
SBS	Chr6	13338408	C-T	HOMO	INTERGENIC
SBS	Chr6	16448627	T-A	HOMO	INTRON
SBS	Chr6	26132496	C-T	HET	INTERGENIC
SBS	Chr7	14391753	C-T	HET	SPLICE_SITE_REGION
SBS	Chr7	19684105	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g32920
SBS	Chr7	21916099	T-C	HET	INTERGENIC
SBS	Chr8	16959349	G-T	HET	INTRON
SBS	Chr9	18172735	G-A	HET	INTERGENIC
SBS	Chr11	8180714	G-A	HOMO	INTRON
SBS	Chr11	12788717	G-A	HOMO	STOP_GAINED	LOC_Os11g22310
SBS	Chr12	1211586	G-A	HET	INTERGENIC
SBS	Chr12	2341745	T-C	HET	INTERGENIC
SBS	Chr12	10176800	G-A	HET	INTRON
SBS	Chr12	22568465	A-T	HET	INTERGENIC

Deletions: 66

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	360001	414000	53999	10
Deletion	Chr9	639736	639737	1
Deletion	Chr11	728595	728604	9
Deletion	Chr1	1313385	1313386	1	LOC_Os01g03240
Deletion	Chr9	1383418	1383419	1	LOC_Os09g02950
Deletion	Chr10	1478545	1478547	2
Deletion	Chr10	3390729	3390751	22
Deletion	Chr3	4295001	4310000	14999	LOC_Os03g32720
Deletion	Chr9	4753131	4753204	73
Deletion	Chr9	4803131	4803132	1
Deletion	Chr2	5096851	5096852	1	LOC_Os02g09870
Deletion	Chr12	5370558	5370559	1
Deletion	Chr5	5540550	5540568	18
Deletion	Chr11	5831539	5831540	1
Deletion	Chr11	5982724	5982727	3	LOC_Os11g10860
Deletion	Chr5	6310337	6310387	50
Deletion	Chr10	6326382	6326383	1
Deletion	Chr5	6411381	6411382	1
Deletion	Chr4	6726292	6726293	1
Deletion	Chr6	7979725	7979736	11
Deletion	Chr6	8460545	8460546	1
Deletion	Chr12	8522689	8522692	3
Deletion	Chr7	9236040	9236041	1
Deletion	Chr12	9705869	9705870	1
Deletion	Chr11	9981924	9981925	1
Deletion	Chr1	11489604	11489605	1
Deletion	Chr11	11501358	11501359	1
Deletion	Chr9	11645554	11645624	70
Deletion	Chr8	11825151	11825218	67
Deletion	Chr12	11911824	11911825	1
Deletion	Chr5	12019469	12019470	1
Deletion	Chr1	12116038	12116039	1
Deletion	Chr7	12164891	12164893	2
Deletion	Chr7	12240311	12240312	1
Deletion	Chr1	12844290	12844291	1
Deletion	Chr5	12954557	12954558	1
Deletion	Chr8	13015583	13015584	1
Deletion	Chr9	13750392	13750393	1
Deletion	Chr10	14078514	14078515	1
Deletion	Chr10	14212029	14212030	1
Deletion	Chr4	14263621	14263622	1
Deletion	Chr11	14358048	14358049	1	LOC_Os11g25200
Deletion	Chr11	14358365	14358366	1
Deletion	Chr8	14905489	14905490	1
Deletion	Chr7	15827465	15827510	45
Deletion	Chr2	16564181	16564278	97
Deletion	Chr11	16809509	16809572	63
Deletion	Chr12	17479698	17479748	50	LOC_Os12g29430
Deletion	Chr7	20498435	20498436	1
Deletion	Chr3	20810052	20810053	1	LOC_Os03g37500
Deletion	Chr6	21771389	21771452	63
Deletion	Chr4	22002195	22002196	1
Deletion	Chr6	22384700	22384764	64
Deletion	Chr5	23052307	23052308	1
Deletion	Chr11	24645115	24645116	1
Deletion	Chr4	24733286	24733293	7
Deletion	Chr6	25371892	25371893	1	LOC_Os06g42250
Deletion	Chr11	28628162	28628163	1
Deletion	Chr4	29713232	29713236	4
Deletion	Chr1	29866893	29866895	2
Deletion	Chr2	30793140	30793141	1
Deletion	Chr1	31339678	31339679	1
Deletion	Chr4	33293328	33293370	42
Deletion	Chr1	34069850	34069853	3
Deletion	Chr3	35686126	35686127	1
Deletion	Chr1	42526281	42526282	1

Insertions: 51

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	4555888	4555888	1
Insertion	Chr1	20181135	20181137	3
Insertion	Chr1	22508981	22508981	1
Insertion	Chr1	28135120	28135127	8
Insertion	Chr2	11030182	11030192	11
Insertion	Chr2	24766580	24766580	1
Insertion	Chr2	33687580	33687580	1
Insertion	Chr3	8245080	8245134	55
Insertion	Chr3	13514048	13514048	1
Insertion	Chr3	23143532	23143532	1	LOC_Os03g41624
Insertion	Chr3	25259054	25259057	4
Insertion	Chr3	31280028	31280037	10
Insertion	Chr4	4268572	4268572	1
Insertion	Chr4	7871912	7871934	23
Insertion	Chr4	22528362	22528406	45
Insertion	Chr4	32269364	32269364	1
Insertion	Chr5	5661449	5661449	1
Insertion	Chr5	10211480	10211480	1
Insertion	Chr6	4514099	4514099	1	LOC_Os06g08950
Insertion	Chr6	7028658	7028729	72
Insertion	Chr6	11372200	11372201	2
Insertion	Chr6	16436960	16436998	39
Insertion	Chr6	29316479	29316479	1
Insertion	Chr7	13114638	13114638	1
Insertion	Chr7	15761476	15761477	2
Insertion	Chr7	15967538	15967538	1
Insertion	Chr7	17430499	17430501	3
Insertion	Chr7	17968057	17968057	1	LOC_Os07g30360
Insertion	Chr7	29283370	29283370	1
Insertion	Chr8	12369352	12369352	1
Insertion	Chr8	21275090	21275160	71
Insertion	Chr8	22240896	22240896	1
Insertion	Chr9	157564	157567	4	LOC_Os09g01150
Insertion	Chr9	5365238	5365238	1
Insertion	Chr9	5740439	5740439	1
Insertion	Chr9	8227266	8227268	3
Insertion	Chr9	9259289	9259289	1
Insertion	Chr10	164450	164450	1
Insertion	Chr10	3923863	3923863	1
Insertion	Chr10	5665704	5665706	3
Insertion	Chr10	8750831	8750831	1
Insertion	Chr10	8854365	8854365	1
Insertion	Chr10	10067093	10067093	1
Insertion	Chr10	10455541	10455541	1
Insertion	Chr11	7021038	7021038	1
Insertion	Chr11	12649782	12649782	1
Insertion	Chr11	18074281	18074282	2
Insertion	Chr11	18759708	18759711	4	LOC_Os11g31920
Insertion	Chr11	21226713	21226713	1
Insertion	Chr11	23031529	23031550	22
Insertion	Chr12	14610999	14611000	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	600466	696973	LOC_Os05g02060

Translocations: 18

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	600434	Chr4	4408500	LOC_Os05g02060
Translocation	Chr5	696967	Chr4	4408498
Translocation	Chr4	724907	Chr3	31273242
Translocation	Chr12	3253647	Chr8	17492515	2
Translocation	Chr9	6127699	Chr5	754968	2
Translocation	Chr9	6385471	Chr1	10914859
Translocation	Chr5	8562078	Chr1	40306295
Translocation	Chr8	8711799	Chr3	8414052	LOC_Os03g15380
Translocation	Chr9	10396957	Chr1	42148951
Translocation	Chr10	13764672	Chr2	29617583
Translocation	Chr6	13897631	Chr1	8742073	LOC_Os06g23780
Translocation	Chr6	13898931	Chr1	8742070
Translocation	Chr5	15019882	Chr2	17615209	LOC_Os02g29610
Translocation	Chr8	15027895	Chr7	11295924
Translocation	Chr6	15873932	Chr1	8112024
Translocation	Chr12	20230686	Chr2	24154265
Translocation	Chr4	22148736	Chr3	15326889
Translocation	Chr11	23663020	Chr6	11605812

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