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Mutant Information

Variant Information

Single base substitutions: 42

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	36301422	G-A	HET	INTRON
SBS	Chr1	37157896	A-T	HOMO	INTERGENIC
SBS	Chr1	41766127	T-A	HET	INTERGENIC
SBS	Chr2	8138956	A-T	HET	INTRON
SBS	Chr2	13020747	T-C	HET	INTERGENIC
SBS	Chr2	17958449	T-A	HET	INTERGENIC
SBS	Chr2	18464863	A-C	HET	INTERGENIC
SBS	Chr2	28991310	A-C	HOMO	INTERGENIC
SBS	Chr2	34268042	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g56000
SBS	Chr2	34273331	C-A	HET	INTERGENIC
SBS	Chr3	21806007	C-T	HET	INTERGENIC
SBS	Chr3	30792560	T-A	HET	INTRON
SBS	Chr4	4990721	G-A	HET	INTERGENIC
SBS	Chr4	12725064	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g22470
SBS	Chr4	25473454	C-T	HET	INTERGENIC
SBS	Chr4	25967294	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr5	471486	T-C	HET	UTR_5_PRIME
SBS	Chr5	471489	G-A	HET	UTR_5_PRIME
SBS	Chr5	8667222	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g15280
SBS	Chr5	9373287	C-T	HET	SYNONYMOUS_CODING
SBS	Chr5	11661483	G-A	HET	INTRON
SBS	Chr5	20171525	G-A	HOMO	INTERGENIC
SBS	Chr5	21647758	G-A	HOMO	INTERGENIC
SBS	Chr5	29795382	T-A	HOMO	INTERGENIC
SBS	Chr7	2488436	C-T	HET	INTERGENIC
SBS	Chr8	7687850	A-C	HOMO	INTERGENIC
SBS	Chr8	7687852	G-A	HOMO	INTERGENIC
SBS	Chr8	9035436	C-T	HOMO	INTERGENIC
SBS	Chr9	6521380	T-C	HET	INTERGENIC
SBS	Chr9	6526326	C-T	HET	INTERGENIC
SBS	Chr9	12755921	C-A	HET	INTERGENIC
SBS	Chr9	13318932	G-T	HET	INTERGENIC
SBS	Chr10	1026833	C-G	HET	INTERGENIC
SBS	Chr10	8030308	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g15250
SBS	Chr10	8746787	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g17360
SBS	Chr10	9920638	G-A	HET	INTERGENIC
SBS	Chr10	11271297	A-G	HET	INTERGENIC
SBS	Chr11	10483476	C-G	HET	INTERGENIC
SBS	Chr12	5705049	C-A	HET	STOP_GAINED	LOC_Os12g10670
SBS	Chr12	6619796	C-T	HET	INTRON
SBS	Chr12	6870748	C-G	HET	INTRON
SBS	Chr12	17036479	C-A	HET	INTERGENIC

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	320001	400000	79999	14
Deletion	Chr11	831490	831494	4
Deletion	Chr8	1023330	1023341	11
Deletion	Chr12	1286838	1286840	2
Deletion	Chr10	4532432	4532454	22
Deletion	Chr10	6046217	6046218	1
Deletion	Chr10	6596533	6596536	3
Deletion	Chr9	6887853	6887855	2
Deletion	Chr7	7079240	7079248	8	LOC_Os07g12410
Deletion	Chr9	7137081	7137082	1
Deletion	Chr2	7521642	7521643	1
Deletion	Chr2	8889147	8889148	1
Deletion	Chr5	10359133	10359138	5
Deletion	Chr4	10596774	10596775	1	LOC_Os04g19090
Deletion	Chr7	11142001	11163000	20999	3
Deletion	Chr11	17706272	17706275	3
Deletion	Chr8	17945635	17945637	2
Deletion	Chr8	18027277	18027280	3
Deletion	Chr9	18109001	18251000	141999	22
Deletion	Chr4	18344001	18361000	16999	2
Deletion	Chr8	19612217	19612229	12
Deletion	Chr8	25512001	25527000	14999	LOC_Os09g01002
Deletion	Chr7	28581796	28581798	2
Deletion	Chr5	29491241	29491252	11
Deletion	Chr2	31999001	32042000	42999	10

Insertions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr6	15006669	15006669	1	LOC_Os06g25680
Insertion	Chr1	16895894	16895894	1
Insertion	Chr1	26678442	26678442	1
Insertion	Chr2	31844652	31844652	1
Insertion	Chr4	7257204	7257205	2
Insertion	Chr4	8027137	8027137	1
Insertion	Chr4	25990439	25990440	2
Insertion	Chr5	10317829	10317829	1
Insertion	Chr5	10367630	10367630	1
Insertion	Chr6	4830624	4830624	1
Insertion	Chr6	8507675	8507683	9
Insertion	Chr7	1308316	1308324	9
Insertion	Chr7	25178330	25178331	2	LOC_Os07g42060
Insertion	Chr9	94325	94325	1
Insertion	Chr10	21062114	21062114	1
Insertion	Chr11	15270196	15270197	2
Insertion	Chr11	20630907	20630907	1
Insertion	Chr12	17472082	17472082	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	3732122	3956409
Inversion	Chr5	6565841	6935841	LOC_Os05g12130
Inversion	Chr5	6565846	6935841	LOC_Os05g12130

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	1185214	Chr2	27516208
Translocation	Chr10	2044486	Chr9	9544753	LOC_Os10g04342
Translocation	Chr9	4108906	Chr7	14108125
Translocation	Chr8	10070735	Chr5	5212194
Translocation	Chr12	12674041	Chr8	4812157
Translocation	Chr12	13773352	Chr4	713996
Translocation	Chr10	22332742	Chr1	39121651

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