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Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15509372	A-T	HET
SBS	Chr1	35043964	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g60620
SBS	Chr1	39343403	C-A	HET
SBS	Chr10	3323083	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g06450
SBS	Chr10	603218	C-T	HET
SBS	Chr12	10317340	G-T	HET
SBS	Chr2	21396320	C-T	HET
SBS	Chr2	30234027	C-T	Homo
SBS	Chr4	14436160	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g25030
SBS	Chr4	31232324	T-A	HET
SBS	Chr4	5083404	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g09480
SBS	Chr4	5207157	C-T	HET
SBS	Chr5	10650793	G-T	HET
SBS	Chr5	24473789	C-A	HET
SBS	Chr5	26922750	A-G	HET
SBS	Chr5	6476233	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g11428
SBS	Chr5	7881067	C-T	HET
SBS	Chr6	11370762	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g19890
SBS	Chr7	1786001	C-G	HET
SBS	Chr7	22811745	G-A	Homo
SBS	Chr7	29040218	T-A	Homo
SBS	Chr8	12509609	C-G	HET
SBS	Chr8	16197797	G-A	HET
SBS	Chr8	16448122	A-T	HET
SBS	Chr8	21010372	G-T	HET
SBS	Chr8	5201263	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g08950
SBS	Chr9	10201850	C-A	HET
SBS	Chr9	11727803	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os09g19620
SBS	Chr9	16847344	C-A	HET
SBS	Chr9	16847345	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g27670
SBS	Chr9	1979448	G-A	Homo

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	11816832	11816833	1
Deletion	Chr9	16820805	16820816	11
Deletion	Chr7	17211857	17211858	1
Deletion	Chr6	17684901	17685026	125
Deletion	Chr12	20240099	20240100	1
Deletion	Chr4	22292001	22523000	230999	42
Deletion	Chr6	22363571	22363580	9
Deletion	Chr4	22526001	22751000	224999	32
Deletion	Chr4	22759001	22920000	160999	35
Deletion	Chr8	26895109	26895110	1	LOC_Os08g42550
Deletion	Chr2	27358719	27358724	5
Deletion	Chr7	28769919	28769926	7
Deletion	Chr3	35194048	35194052	4

Insertions: 10

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	36226165	36226165	1	LOC_Os01g62570
Insertion	Chr1	40421947	40421950	4
Insertion	Chr1	8075256	8075257	2
Insertion	Chr10	5528250	5528250	1
Insertion	Chr2	33247979	33247979	1
Insertion	Chr6	16138998	16138999	2
Insertion	Chr6	2292885	2292887	3
Insertion	Chr6	2480356	2480357	2
Insertion	Chr8	18774376	18774379	4
Insertion	Chr8	21890634	21890634	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	5127700	5149915	2
Inversion	Chr1	31998356	32184652
Inversion	Chr1	31998399	32184650

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	5328460	Chr1	33752558	LOC_Os04g09910
Translocation	Chr7	13868166	Chr2	2776358	2

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