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Mutant Information

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13508650	C-A	HET
SBS	Chr1	29889976	G-A	HET
SBS	Chr10	1765893	G-A	Homo
SBS	Chr10	9052411	C-T	Homo
SBS	Chr10	9289823	T-A	Homo
SBS	Chr10	9289824	C-A	Homo
SBS	Chr11	13018821	C-T	HET
SBS	Chr11	16327713	G-A	HET
SBS	Chr11	2084533	A-G	HET
SBS	Chr11	21017059	A-G	HET
SBS	Chr11	22433176	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g37860
SBS	Chr12	14629870	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g25350
SBS	Chr12	3920057	G-A	HET
SBS	Chr2	27848389	C-T	HET
SBS	Chr2	7102896	A-G	Homo
SBS	Chr3	17301263	C-T	HET
SBS	Chr3	25165612	T-C	HET
SBS	Chr4	16304317	G-T	Homo
SBS	Chr4	16525189	G-A	HET
SBS	Chr4	5652800	G-T	Homo
SBS	Chr4	7279312	G-A	HET
SBS	Chr5	25866714	C-T	HET
SBS	Chr5	4955780	T-C	HET
SBS	Chr6	14746660	A-C	Homo
SBS	Chr6	27535646	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g45520
SBS	Chr6	28248974	G-T	Homo
SBS	Chr7	10982186	T-A	HET
SBS	Chr7	23489980	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g39230
SBS	Chr7	26647677	C-T	HET	SPLICE_SITE_DONOR	LOC_Os07g44670
SBS	Chr8	16928364	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g27790
SBS	Chr8	23606771	C-T	HET
SBS	Chr8	28429988	G-A	HET

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	293270	293277	7	LOC_Os01g01580
Deletion	Chr12	1054001	1204000	149999	28
Deletion	Chr5	2972520	2972522	2
Deletion	Chr7	3528809	3528811	2
Deletion	Chr10	5777827	5777832	5
Deletion	Chr11	6116915	6116916	1
Deletion	Chr2	7109777	7109783	6
Deletion	Chr8	7953540	7953541	1
Deletion	Chr10	8897309	8897322	13
Deletion	Chr6	14300001	14642000	341999	52
Deletion	Chr2	15705913	15705915	2	LOC_Os02g26740
Deletion	Chr3	16246890	16246895	5
Deletion	Chr8	16576616	16576617	1
Deletion	Chr6	16910001	16945000	34999	7
Deletion	Chr3	20045813	20045820	7
Deletion	Chr3	25341652	25341654	2

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	19947889	19947889	1
Insertion	Chr2	3574739	3574739	1
Insertion	Chr3	24372293	24372294	2	LOC_Os03g43610
Insertion	Chr4	2359340	2359341	2
Insertion	Chr4	24906951	24906952	2
Insertion	Chr6	20749227	20749229	3
Insertion	Chr7	1126900	1126900	1
Insertion	Chr9	14311000	14311000	1

Inversions: 8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	744928	745122
Inversion	Chr7	13037753	13043431	LOC_Os07g23120
Inversion	Chr7	13037766	13043440	LOC_Os07g23120
Inversion	Chr7	13137631	13462194	LOC_Os07g23300
Inversion	Chr8	18666183	19596717	LOC_Os08g30330
Inversion	Chr8	18666184	19596717	LOC_Os08g30330
Inversion	Chr7	27594562	28200712
Inversion	Chr7	27594571	28200712

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	4541235	Chr5	29429747	2
Translocation	Chr9	5559325	Chr1	5689927	2
Translocation	Chr10	6277416	Chr8	230114	2
Translocation	Chr10	6277422	Chr8	228663	2
Translocation	Chr10	10944339	Chr2	7858183	2
Translocation	Chr12	16808030	Chr9	4916640
Translocation	Chr7	22918003	Chr5	14513562	2

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