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Mutant Information

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16224538	C-T	HET
SBS	Chr1	17058643	C-T	HET
SBS	Chr1	25858823	C-A	HET
SBS	Chr1	32205208	C-A	Homo
SBS	Chr10	14813865	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g28470
SBS	Chr10	6020725	G-A	HET
SBS	Chr10	8077406	T-C	HET
SBS	Chr11	13529801	G-A	HET
SBS	Chr11	21321892	G-T	HET
SBS	Chr12	12520350	G-A	Homo
SBS	Chr12	14570933	T-A	Homo
SBS	Chr2	10724490	A-T	HET
SBS	Chr2	13813178	T-A	HET
SBS	Chr2	31170103	C-G	HET
SBS	Chr2	9869493	C-A	Homo
SBS	Chr3	10326369	A-T	HET
SBS	Chr3	23796548	T-G	Homo
SBS	Chr3	5398401	A-G	HET
SBS	Chr4	8142517	G-A	Homo
SBS	Chr5	10981887	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g18920
SBS	Chr5	10981889	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g18920
SBS	Chr5	10981891	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g18920
SBS	Chr5	17739522	T-C	HET
SBS	Chr5	23222048	G-A	Homo
SBS	Chr5	5425947	T-G	HET
SBS	Chr5	6082585	C-T	HET
SBS	Chr6	21607224	G-C	HET
SBS	Chr7	15105292	A-G	HET
SBS	Chr8	10555451	C-T	HET
SBS	Chr8	12107532	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g20180
SBS	Chr8	1365283	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g03040
SBS	Chr8	15556838	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g25570
SBS	Chr8	17188529	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g28160
SBS	Chr8	18734116	A-G	HET
SBS	Chr8	19562622	C-A	HET
SBS	Chr9	18574205	A-G	HET

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	2671461	2671468	7
Deletion	Chr4	7401388	7401396	8	LOC_Os04g13320
Deletion	Chr4	8052593	8052596	3
Deletion	Chr2	8247106	8247107	1	LOC_Os02g14840
Deletion	Chr9	8578001	8766000	187999	25
Deletion	Chr9	8773001	8797000	23999	3
Deletion	Chr9	8802001	8838000	35999	4
Deletion	Chr9	8849001	8866000	16999	2
Deletion	Chr10	9640976	9640977	1
Deletion	Chr5	11455459	11455461	2
Deletion	Chr4	11647905	11647906	1
Deletion	Chr9	13003673	13003674	1
Deletion	Chr11	16402986	16402988	2
Deletion	Chr2	18758234	18758235	1
Deletion	Chr4	22634069	22634075	6
Deletion	Chr6	30287515	30287557	42
Deletion	Chr1	31221649	31221651	2

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	17738803	17738814	12
Insertion	Chr12	10166845	10166845	1
Insertion	Chr12	15267360	15267360	1	LOC_Os12g26190
Insertion	Chr2	8352838	8352839	2
Insertion	Chr4	29377951	29377952	2
Insertion	Chr8	11542155	11542155	1
Insertion	Chr9	22142557	22142560	4

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	959389	976630
Inversion	Chr4	7332769	7417125	LOC_Os04g13240
Inversion	Chr4	7332861	7417133	LOC_Os04g13240
Inversion	Chr6	25405127	25536811	2
Inversion	Chr6	25405205	25536817	2
Inversion	Chr6	27934909	27935525	LOC_Os06g46070

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	4607510	Chr9	7511813	2
Translocation	Chr9	10173943	Chr4	25037326
Translocation	Chr9	10173944	Chr4	25037771
Translocation	Chr10	10250121	Chr5	22169329	LOC_Os10g20390
Translocation	Chr10	13120554	Chr4	34950801	2
Translocation	Chr12	13545259	Chr4	6233521	2
Translocation	Chr12	18179682	Chr1	16356796	2
Translocation	Chr12	23058546	Chr7	23012573
Translocation	Chr11	26257595	Chr4	6930031

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