Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1753999	C-T	HET
SBS	Chr1	20635535	G-T	HET
SBS	Chr1	35991791	G-A	HET
SBS	Chr10	18006607	A-T	HET
SBS	Chr11	14327242	T-A	HET
SBS	Chr11	18442319	C-T	HET
SBS	Chr11	19442766	G-A	HET
SBS	Chr12	13251280	A-G	Homo
SBS	Chr12	17839980	G-T	HET
SBS	Chr12	18251802	C-T	HET
SBS	Chr12	26751575	G-A	HET
SBS	Chr12	4883679	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g09300
SBS	Chr2	6461734	C-T	HET
SBS	Chr2	691779	C-T	HET
SBS	Chr3	13817096	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g24270
SBS	Chr3	19814578	G-C	Homo
SBS	Chr3	30968986	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g54020
SBS	Chr4	25877439	C-T	Homo
SBS	Chr6	26367639	A-G	HET
SBS	Chr7	14222634	C-A	Homo
SBS	Chr7	14746208	G-A	HET
SBS	Chr8	22811119	C-T	Homo
SBS	Chr9	11504891	G-A	Homo
SBS	Chr9	16156899	G-A	HET
SBS	Chr9	22454081	T-C	HET
SBS	Chr9	4154764	G-A	Homo

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	3880096	3880097	1
Deletion	Chr2	11668027	11668031	4
Deletion	Chr12	13256001	13342000	85999	14
Deletion	Chr12	13357001	13372000	14999	2
Deletion	Chr1	15055001	15087000	31999	5
Deletion	Chr3	15920589	15920600	11
Deletion	Chr7	16709404	16709409	5
Deletion	Chr8	21417445	21417449	4
Deletion	Chr11	26633001	26660000	26999	7
Deletion	Chr8	26672356	26672357	1
Deletion	Chr11	27072001	27101000	28999	4
Deletion	Chr11	27106001	27121000	14999	3
Deletion	Chr11	27126001	27239000	112999	16
Deletion	Chr11	27246001	27263000	16999	5
Deletion	Chr11	27272001	27281000	8999	3
Deletion	Chr11	27290001	27299000	8999	2
Deletion	Chr2	31287388	31287389	1

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	33577823	33577824	2
Insertion	Chr1	40308970	40308970	1	LOC_Os01g69810
Insertion	Chr11	16714835	16714836	2
Insertion	Chr4	20186487	20186488	2
Insertion	Chr6	21857133	21857133	1
Insertion	Chr7	16990876	16990890	15

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	13410031	13614989

Translocations: 35

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	3115589	Chr5	24535046	2
Translocation	Chr10	5265863	Chr7	9798557
Translocation	Chr12	5384427	Chr2	16818173
Translocation	Chr11	5743804	Chr10	12207985
Translocation	Chr11	8062122	Chr5	5528680
Translocation	Chr9	8146703	Chr8	19798043	2
Translocation	Chr12	8566889	Chr10	2106336
Translocation	Chr6	9190558	Chr3	2887281	2
Translocation	Chr6	9979238	Chr4	1179008	LOC_Os06g17230
Translocation	Chr12	10847965	Chr8	3231393
Translocation	Chr5	12284701	Chr4	8543085
Translocation	Chr12	13547459	Chr11	22973797	2
Translocation	Chr6	14879720	Chr1	8713315	LOC_Os06g25420
Translocation	Chr11	15952959	Chr7	11854568
Translocation	Chr4	16584622	Chr2	20382715	LOC_Os04g28090
Translocation	Chr12	17881341	Chr2	13548441	2
Translocation	Chr11	17890250	Chr9	4630672
Translocation	Chr9	18370188	Chr8	2960408
Translocation	Chr12	19840888	Chr11	7073112	2
Translocation	Chr12	20285021	Chr1	23525082
Translocation	Chr6	21200642	Chr5	12284701
Translocation	Chr12	21538526	Chr2	5909922	LOC_Os12g35410
Translocation	Chr12	22242044	Chr8	14705929
Translocation	Chr11	22549420	Chr9	22451072	2
Translocation	Chr7	22917860	Chr3	17572593	LOC_Os07g38210
Translocation	Chr8	22955718	Chr5	23558302	2
Translocation	Chr8	22955731	Chr5	23557782	2
Translocation	Chr8	23737584	Chr7	23854829
Translocation	Chr8	25038289	Chr1	2752921	2
Translocation	Chr11	27417964	Chr9	2724446	LOC_Os11g45320
Translocation	Chr11	27843618	Chr6	22525981	2
Translocation	Chr11	28168665	Chr5	29598156	2
Translocation	Chr11	28626994	Chr10	752812
Translocation	Chr11	28683193	Chr7	1481182
Translocation	Chr3	30923708	Chr1	22550939

Main menu