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Mutant Information |
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Mutant Name | FN3345-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN3345-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
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Single base substitutions: 46
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 27008206 | C-T | HET | ||
SBS | Chr10 | 590952 | T-C | HET | ||
SBS | Chr11 | 12891605 | C-A | Homo | ||
SBS | Chr12 | 13226138 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os12g23374 |
SBS | Chr12 | 16593979 | C-T | Homo | ||
SBS | Chr12 | 25857006 | T-A | Homo | ||
SBS | Chr12 | 3269686 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os12g06720 |
SBS | Chr12 | 7191314 | A-T | HET | ||
SBS | Chr2 | 2586813 | G-A | HET | ||
SBS | Chr2 | 27116024 | A-G | HET | ||
SBS | Chr2 | 28728446 | C-T | HET | ||
SBS | Chr2 | 30075691 | G-A | HET | ||
SBS | Chr3 | 13952483 | T-C | HET | ||
SBS | Chr3 | 151486 | G-C | Homo | ||
SBS | Chr3 | 22141554 | G-C | HET | ||
SBS | Chr3 | 22196267 | C-A | HET | ||
SBS | Chr3 | 26229065 | C-A | HET | ||
SBS | Chr3 | 30215260 | T-C | Homo | ||
SBS | Chr3 | 30693700 | A-T | Homo | ||
SBS | Chr3 | 35512115 | G-A | Homo | ||
SBS | Chr4 | 19541831 | G-A | Homo | ||
SBS | Chr4 | 23671412 | G-A | HET | ||
SBS | Chr4 | 3539292 | G-T | HET | ||
SBS | Chr4 | 7398906 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g13310 |
SBS | Chr5 | 11159102 | T-C | HET | ||
SBS | Chr5 | 11528309 | G-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os05g19750 |
SBS | Chr5 | 11709835 | G-T | HET | ||
SBS | Chr5 | 12122345 | C-T | Homo | ||
SBS | Chr5 | 18297418 | C-T | HET | ||
SBS | Chr5 | 21546018 | A-G | HET | ||
SBS | Chr5 | 4797266 | A-T | Homo | ||
SBS | Chr6 | 11326738 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os06g19830 |
SBS | Chr6 | 613764 | C-T | HET | ||
SBS | Chr6 | 6959951 | C-T | Homo | ||
SBS | Chr6 | 970104 | C-T | HET | ||
SBS | Chr7 | 10489927 | G-A | HET | ||
SBS | Chr7 | 11853183 | G-T | HET | ||
SBS | Chr7 | 12735980 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os07g22620 |
SBS | Chr7 | 26530107 | G-A | Homo | ||
SBS | Chr7 | 29641997 | C-T | HET | ||
SBS | Chr7 | 9369962 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os07g16070 |
SBS | Chr8 | 2551764 | C-T | HET | ||
SBS | Chr8 | 4162859 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os08g07410 |
SBS | Chr8 | 7256071 | A-G | HET | ||
SBS | Chr9 | 4076991 | G-A | Homo | ||
SBS | Chr9 | 5709653 | G-C | Homo |
Deletions: 12
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr4 | 724557 | 724558 | 1 | |
Deletion | Chr1 | 1188647 | 1188648 | 1 | |
Deletion | Chr1 | 6258466 | 6258474 | 8 | |
Deletion | Chr8 | 6762001 | 7231000 | 468999 | 70 |
Deletion | Chr12 | 11418509 | 11418514 | 5 | |
Deletion | Chr5 | 11896290 | 11896298 | 8 | |
Deletion | Chr12 | 16345339 | 16345340 | 1 | |
Deletion | Chr6 | 17696349 | 17696357 | 8 | |
Deletion | Chr4 | 19557042 | 19557053 | 11 | |
Deletion | Chr6 | 24164521 | 24164533 | 12 | |
Deletion | Chr7 | 25989774 | 25989777 | 3 | LOC_Os07g43410 |
Deletion | Chr3 | 30707430 | 30707446 | 16 |
Insertions: 3
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr11 | 23637084 | 23637084 | 1 | |
Insertion | Chr3 | 22147578 | 22147579 | 2 | |
Insertion | Chr8 | 3347906 | 3347907 | 2 |
Inversions: 2
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr8 | 6510405 | 6708239 | 2 |
Inversion | Chr8 | 6510524 | 7207548 |
Translocations: 3
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr8 | 604495 | Chr1 | 36878194 | |
Translocation | Chr2 | 14983935 | Chr1 | 20917473 | |
Translocation | Chr11 | 16973826 | Chr1 | 8708829 | LOC_Os11g29274 |