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Mutant Information

Mutant NameFN3345-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN3345-S Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
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Variant Information

Single base substitutions: 46
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr127008206C-THET
SBSChr10590952T-CHET
SBSChr1112891605C-AHomo
SBSChr1213226138C-THomoNON_SYNONYMOUS_CODINGLOC_Os12g23374
SBSChr1216593979C-THomo
SBSChr1225857006T-AHomo
SBSChr123269686C-THETNON_SYNONYMOUS_CODINGLOC_Os12g06720
SBSChr127191314A-THET
SBSChr22586813G-AHET
SBSChr227116024A-GHET
SBSChr228728446C-THET
SBSChr230075691G-AHET
SBSChr313952483T-CHET
SBSChr3151486G-CHomo
SBSChr322141554G-CHET
SBSChr322196267C-AHET
SBSChr326229065C-AHET
SBSChr330215260T-CHomo
SBSChr330693700A-THomo
SBSChr335512115G-AHomo
SBSChr419541831G-AHomo
SBSChr423671412G-AHET
SBSChr43539292G-THET
SBSChr47398906G-AHETNON_SYNONYMOUS_CODINGLOC_Os04g13310
SBSChr511159102T-CHET
SBSChr511528309G-THomoNON_SYNONYMOUS_CODINGLOC_Os05g19750
SBSChr511709835G-THET
SBSChr512122345C-THomo
SBSChr518297418C-THET
SBSChr521546018A-GHET
SBSChr54797266A-THomo
SBSChr611326738G-AHETNON_SYNONYMOUS_CODINGLOC_Os06g19830
SBSChr6613764C-THET
SBSChr66959951C-THomo
SBSChr6970104C-THET
SBSChr710489927G-AHET
SBSChr711853183G-THET
SBSChr712735980C-THETNON_SYNONYMOUS_CODINGLOC_Os07g22620
SBSChr726530107G-AHomo
SBSChr729641997C-THET
SBSChr79369962T-AHETNON_SYNONYMOUS_CODINGLOC_Os07g16070
SBSChr82551764C-THET
SBSChr84162859C-THETNON_SYNONYMOUS_CODINGLOC_Os08g07410
SBSChr87256071A-GHET
SBSChr94076991G-AHomo
SBSChr95709653G-CHomo

Deletions: 12
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr47245577245581
DeletionChr1118864711886481
DeletionChr1625846662584748
DeletionChr86762001723100046899970
DeletionChr1211418509114185145
DeletionChr511896290118962988
DeletionChr1216345339163453401
DeletionChr617696349176963578
DeletionChr4195570421955705311
DeletionChr6241645212416453312
DeletionChr725989774259897773LOC_Os07g43410
DeletionChr3307074303070744616

Insertions: 3
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr1123637084236370841
InsertionChr322147578221475792
InsertionChr8334790633479072

Inversions: 2
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr8651040567082392
InversionChr865105247207548

Translocations: 3
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr8604495Chr136878194
TranslocationChr214983935Chr120917473
TranslocationChr1116973826Chr18708829LOC_Os11g29274