Search Nipponbare

Mutant Information

Mutant Name	FN337-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN337-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	37002457	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr10	15761259	A-G	HET	INTERGENIC
SBS	Chr10	1895170	G-A	HOMO	INTERGENIC
SBS	Chr11	13032440	G-A	HET	INTRON
SBS	Chr11	19714826	T-A	HET	INTRON
SBS	Chr12	1420273	T-C	HOMO	INTRON
SBS	Chr12	1789720	C-G	HOMO	INTERGENIC
SBS	Chr12	1789721	A-G	HOMO	INTERGENIC
SBS	Chr12	312314	G-A	HET	INTERGENIC
SBS	Chr2	20101805	C-T	HOMO	INTERGENIC
SBS	Chr2	29857595	T-A	HOMO	INTERGENIC
SBS	Chr2	30326480	A-G	HET	INTRON
SBS	Chr2	35569684	G-T	HOMO	INTRON
SBS	Chr2	6494962	A-G	HET	SYNONYMOUS_CODING
SBS	Chr3	2367273	A-G	HET	INTERGENIC
SBS	Chr3	26108759	G-C	HET	INTRON
SBS	Chr3	9470125	A-G	HET	INTERGENIC
SBS	Chr4	20323978	C-T	HET	INTERGENIC
SBS	Chr4	21470500	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g35305
SBS	Chr5	4794471	C-T	HET	INTERGENIC
SBS	Chr6	24180715	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr6	30960943	C-A	HET	INTRON
SBS	Chr6	4058935	G-A	HET	INTERGENIC
SBS	Chr7	13044831	G-A	HET	INTERGENIC
SBS	Chr7	18013017	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g30430
SBS	Chr7	18162574	G-A	HET	INTERGENIC
SBS	Chr7	99096	A-G	HET	INTERGENIC
SBS	Chr8	25054498	G-A	HET	INTERGENIC
SBS	Chr8	4892650	G-C	HET	INTERGENIC
SBS	Chr8	4892651	T-A	HET	INTERGENIC
SBS	Chr8	7516616	T-C	HOMO	INTERGENIC
SBS	Chr9	17107903	G-A	HET	INTERGENIC

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	1344807	1344810	3	LOC_Os01g03330
Deletion	Chr3	3657338	3657340	2	2
Deletion	Chr12	5055854	5055855	1
Deletion	Chr2	7852218	7852228	10	LOC_Os02g14300
Deletion	Chr10	8799769	8799783	14
Deletion	Chr10	9261875	9261905	30
Deletion	Chr3	13336901	13336918	17	LOC_Os03g23070
Deletion	Chr2	15013001	15062000	49000	6
Deletion	Chr10	16415275	16415277	2	LOC_Os10g31290
Deletion	Chr10	16426808	16426841	33	LOC_Os10g31320
Deletion	Chr12	17984160	17984161	1
Deletion	Chr11	18778234	18778257	23
Deletion	Chr6	19381144	19381154	10	LOC_Os06g33290
Deletion	Chr1	19567187	19567190	3
Deletion	Chr10	20395129	20395130	1	LOC_Os10g38090
Deletion	Chr2	21685872	21685897	25
Deletion	Chr8	26911883	26911886	3	LOC_Os08g42580
Deletion	Chr3	28118313	28118316	3
Deletion	Chr11	28790449	28790453	4
Deletion	Chr3	30452767	30452768	1	LOC_Os03g53100
Deletion	Chr2	35569768	35569777	9	LOC_Os02g58120

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	9413777	9413778	2	LOC_Os10g18560
Insertion	Chr11	22223380	22223383	4
Insertion	Chr2	19427799	19427804	6
Insertion	Chr5	2389364	2389364	1
Insertion	Chr6	10367526	10367526	1
Insertion	Chr7	24289012	24289013	2
Insertion	Chr8	9212042	9212042	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	15005236	15317177	LOC_Os10g29490
Inversion	Chr10	15011757	15317176	2
Inversion	Chr1	42595960	42647554	2

No Translocation

Main menu