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Mutant Information

Variant Information

Single base substitutions: 43

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1138838	G-A	HET
SBS	Chr1	13672776	C-T	Homo
SBS	Chr1	34011209	C-T	HET
SBS	Chr1	38731392	A-T	HET
SBS	Chr1	4169727	T-G	HET
SBS	Chr10	3221359	C-T	HET
SBS	Chr10	9768741	A-G	HET
SBS	Chr11	25546240	C-T	Homo
SBS	Chr12	13077372	C-T	HET
SBS	Chr12	17083659	T-A	HET
SBS	Chr12	3826918	C-A	HET
SBS	Chr2	10199560	T-A	Homo
SBS	Chr2	16112957	T-A	Homo
SBS	Chr2	26607085	T-G	Homo
SBS	Chr2	4581691	A-G	HET
SBS	Chr3	13479986	G-T	HET
SBS	Chr3	13479987	C-T	HET
SBS	Chr3	1576442	T-A	HET
SBS	Chr3	16841980	G-T	Homo
SBS	Chr3	1838424	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g04030
SBS	Chr3	23665874	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g42530
SBS	Chr3	2987476	A-G	HET
SBS	Chr4	15325223	C-A	HET	STOP_GAINED	LOC_Os04g26290
SBS	Chr4	24416194	G-A	Homo
SBS	Chr4	30190229	C-T	HET
SBS	Chr4	3108243	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g06000
SBS	Chr5	11352434	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g19530
SBS	Chr5	18217872	T-C	HET
SBS	Chr5	20369899	T-A	HET
SBS	Chr5	23131082	C-T	HET
SBS	Chr5	28065678	T-C	HET
SBS	Chr6	11319208	C-T	HET
SBS	Chr6	24387851	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g40900
SBS	Chr6	3664775	T-A	HET
SBS	Chr7	19611413	T-A	HET
SBS	Chr7	21582576	A-C	Homo
SBS	Chr8	13885817	C-T	HET
SBS	Chr8	14514557	C-A	HET	STOP_GAINED	LOC_Os08g23990
SBS	Chr8	2808649	G-A	Homo
SBS	Chr8	5226459	G-A	HET
SBS	Chr9	271479	G-C	Homo
SBS	Chr9	5747435	G-A	HET
SBS	Chr9	9338407	A-G	HET

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	395411	395429	18
Deletion	Chr8	2207349	2207354	5	LOC_Os08g04490
Deletion	Chr6	5742812	5742813	1
Deletion	Chr8	6226337	6226343	6
Deletion	Chr4	6883935	6883936	1
Deletion	Chr10	7294619	7294622	3
Deletion	Chr9	8226361	8226362	1
Deletion	Chr3	9695426	9695427	1	LOC_Os03g17426
Deletion	Chr7	11306196	11306197	1
Deletion	Chr8	14335980	14335982	2
Deletion	Chr6	14606073	14606090	17
Deletion	Chr3	15565928	15565933	5
Deletion	Chr3	15810976	15810988	12
Deletion	Chr3	16099922	16099924	2	LOC_Os03g28010
Deletion	Chr2	21835062	21835072	10
Deletion	Chr11	21886438	21886447	9
Deletion	Chr8	21972972	21972973	1
Deletion	Chr2	22772934	22772936	2
Deletion	Chr5	26129485	26129486	1
Deletion	Chr4	26209510	26209511	1
Deletion	Chr2	33923704	33923705	1
Deletion	Chr4	34673497	34673499	2	LOC_Os04g58230
Deletion	Chr2	34832010	34832017	7
Deletion	Chr3	35381390	35381391	1	LOC_Os03g62480

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	26582459	26582460	2
Insertion	Chr10	2551930	2551930	1
Insertion	Chr3	2004304	2004304	1	LOC_Os03g04340
Insertion	Chr8	6625934	6625934	1
Insertion	Chr9	1548645	1548645	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	11354208	11750971	2
Inversion	Chr12	15828238	15828581	2
Inversion	Chr3	31313821	31314070

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	16956539	Chr6	4179223	2
Translocation	Chr11	16956860	Chr6	4178319	2
Translocation	Chr2	19802229	Chr1	33760538

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