Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN3380-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3380-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 41
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 10467084 | G-A | HET | ||
| SBS | Chr1 | 23056757 | G-A | HET | ||
| SBS | Chr1 | 7360721 | A-T | HET | ||
| SBS | Chr10 | 1238340 | A-G | Homo | ||
| SBS | Chr10 | 18536258 | G-A | HET | ||
| SBS | Chr11 | 9777744 | C-T | HET | ||
| SBS | Chr12 | 16725106 | C-T | HET | ||
| SBS | Chr12 | 22608654 | C-T | HET | ||
| SBS | Chr12 | 5723168 | T-C | HET | ||
| SBS | Chr2 | 22367166 | A-C | HET | START_LOST | LOC_Os02g37030 |
| SBS | Chr2 | 28972665 | C-T | HET | ||
| SBS | Chr2 | 30421765 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os02g49760 |
| SBS | Chr2 | 30421766 | G-C | HET | ||
| SBS | Chr2 | 3090723 | T-A | HET | ||
| SBS | Chr3 | 12705674 | C-T | Homo | ||
| SBS | Chr3 | 15013438 | A-G | HET | ||
| SBS | Chr3 | 27444505 | T-G | Homo | ||
| SBS | Chr3 | 33702400 | G-C | HET | ||
| SBS | Chr3 | 8964965 | G-A | HET | ||
| SBS | Chr4 | 11806445 | G-A | Homo | ||
| SBS | Chr4 | 13243604 | G-T | Homo | ||
| SBS | Chr4 | 16360086 | T-C | Homo | ||
| SBS | Chr4 | 25453134 | G-A | HET | ||
| SBS | Chr4 | 28696437 | G-T | HET | ||
| SBS | Chr4 | 28696440 | G-T | HET | ||
| SBS | Chr4 | 30924724 | A-G | HET | ||
| SBS | Chr5 | 12402784 | C-T | HET | ||
| SBS | Chr5 | 25719034 | A-T | HET | ||
| SBS | Chr6 | 1054906 | G-C | HET | ||
| SBS | Chr6 | 16518926 | C-A | HET | ||
| SBS | Chr6 | 16519645 | A-T | HET | ||
| SBS | Chr6 | 16519646 | G-T | HET | ||
| SBS | Chr6 | 17555455 | C-T | HET | ||
| SBS | Chr7 | 121880 | T-C | HET | ||
| SBS | Chr7 | 16491 | C-T | HET | ||
| SBS | Chr7 | 19980782 | A-G | HET | ||
| SBS | Chr7 | 256228 | T-A | HET | ||
| SBS | Chr7 | 6765957 | C-T | HET | ||
| SBS | Chr8 | 10518505 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os08g17170 |
| SBS | Chr8 | 21331080 | T-A | HET | ||
| SBS | Chr9 | 20293237 | G-T | Homo |
Deletions: 9
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr5 | 2595992 | 2595993 | 1 | LOC_Os05g05270 |
| Deletion | Chr10 | 13117777 | 13117779 | 2 | |
| Deletion | Chr3 | 17301790 | 17301797 | 7 | |
| Deletion | Chr4 | 17466071 | 17466078 | 7 | |
| Deletion | Chr3 | 19194001 | 19546000 | 351999 | 69 |
| Deletion | Chr9 | 20783250 | 20783263 | 13 | LOC_Os09g36090 |
| Deletion | Chr3 | 29627928 | 29627929 | 1 | |
| Deletion | Chr4 | 32401162 | 32401163 | 1 | |
| Deletion | Chr1 | 34156081 | 34156087 | 6 |
Insertions: 5
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 15602261 | 15602261 | 1 | LOC_Os01g27910 |
| Insertion | Chr10 | 7670349 | 7670349 | 1 | |
| Insertion | Chr11 | 10057103 | 10057104 | 2 | |
| Insertion | Chr4 | 11739351 | 11739404 | 54 | |
| Insertion | Chr5 | 20773130 | 20773131 | 2 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr12 | 18304455 | 18801974 | LOC_Os12g30490 |
| Inversion | Chr12 | 18304463 | 18801809 | LOC_Os12g30490 |
| Inversion | Chr4 | 29716975 | 30455775 | LOC_Os04g49850 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 16928077 | Chr6 | 17693106 | LOC_Os12g28630 |
| Translocation | Chr6 | 17693107 | Chr2 | 34434122 | 2 |
| Translocation | Chr6 | 17693810 | Chr2 | 34434129 | 2 |
| Translocation | Chr7 | 19416460 | Chr1 | 34821287 | |
| Translocation | Chr7 | 26294640 | Chr2 | 19409558 | 2 |
| Translocation | Chr11 | 28186815 | Chr3 | 6490614 |