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Mutant Information |
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Mutant Name | FN3396-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN3396-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 44
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 9632093 | C-G | HET | ||
SBS | Chr1 | 11155665 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os01g19670 |
SBS | Chr1 | 15043653 | C-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os01g27000 |
SBS | Chr1 | 20221263 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g36430 |
SBS | Chr1 | 22136096 | A-T | HET | ||
SBS | Chr1 | 22136097 | G-A | HET | ||
SBS | Chr1 | 25031432 | G-A | HET | ||
SBS | Chr1 | 31864910 | A-T | HET | ||
SBS | Chr1 | 34205232 | T-A | HET | ||
SBS | Chr1 | 37019436 | T-C | HET | ||
SBS | Chr2 | 17623 | T-A | Homo | ||
SBS | Chr2 | 955876 | A-T | Homo | ||
SBS | Chr2 | 8421751 | A-T | Homo | ||
SBS | Chr2 | 13040696 | C-G | HET | ||
SBS | Chr2 | 26164167 | C-A | HET | ||
SBS | Chr3 | 3008298 | G-T | HET | ||
SBS | Chr3 | 26225010 | C-G | HET | ||
SBS | Chr3 | 26453196 | T-A | Homo | ||
SBS | Chr3 | 26453197 | G-C | Homo | ||
SBS | Chr3 | 26455471 | C-A | Homo | ||
SBS | Chr3 | 28345469 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g49790 |
SBS | Chr5 | 2048550 | C-T | HET | ||
SBS | Chr5 | 17385716 | C-T | HET | ||
SBS | Chr5 | 18350050 | C-T | Homo | ||
SBS | Chr6 | 2342956 | G-A | HET | ||
SBS | Chr6 | 12124052 | T-C | HET | ||
SBS | Chr6 | 12124055 | G-A | HET | ||
SBS | Chr6 | 15339830 | C-T | HET | STOP_GAINED | LOC_Os06g26234 |
SBS | Chr6 | 15586739 | A-G | HET | ||
SBS | Chr6 | 17727839 | T-C | HET | ||
SBS | Chr6 | 25097622 | C-T | HET | ||
SBS | Chr7 | 14286025 | G-T | HET | ||
SBS | Chr7 | 16907619 | T-G | HET | ||
SBS | Chr8 | 4437435 | T-C | HET | ||
SBS | Chr8 | 18539454 | C-A | Homo | STOP_GAINED | LOC_Os08g30140 |
SBS | Chr8 | 21354612 | T-A | Homo | ||
SBS | Chr9 | 1306635 | A-T | HET | ||
SBS | Chr9 | 6155134 | A-G | HET | ||
SBS | Chr9 | 16837624 | G-A | Homo | ||
SBS | Chr10 | 11258249 | C-A | HET | ||
SBS | Chr11 | 134533 | T-C | HET | ||
SBS | Chr11 | 4179880 | T-A | HET | ||
SBS | Chr11 | 7385017 | A-G | HET | ||
SBS | Chr12 | 25134919 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os12g40610 |
Deletions: 22
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr2 | 2817683 | 2817686 | 3 | |
Deletion | Chr4 | 3929575 | 3929577 | 2 | |
Deletion | Chr7 | 7023345 | 7023346 | 1 | |
Deletion | Chr8 | 8121411 | 8121418 | 7 | |
Deletion | Chr2 | 8336961 | 8336971 | 10 | |
Deletion | Chr10 | 14374635 | 14374641 | 6 | |
Deletion | Chr12 | 15028134 | 15028135 | 1 | LOC_Os12g25910 |
Deletion | Chr3 | 16805002 | 16805010 | 8 | LOC_Os03g29480 |
Deletion | Chr5 | 17725244 | 17725245 | 1 | |
Deletion | Chr4 | 17819989 | 17819990 | 1 | |
Deletion | Chr9 | 17820370 | 17820374 | 4 | |
Deletion | Chr9 | 17868977 | 17868988 | 11 | |
Deletion | Chr9 | 17991996 | 17992012 | 16 | |
Deletion | Chr7 | 19435455 | 19435460 | 5 | |
Deletion | Chr5 | 21361896 | 21361910 | 14 | |
Deletion | Chr2 | 22253041 | 22253043 | 2 | |
Deletion | Chr7 | 22574973 | 22574974 | 1 | |
Deletion | Chr1 | 22651497 | 22651499 | 2 | |
Deletion | Chr6 | 26082094 | 26082095 | 1 | |
Deletion | Chr3 | 26223580 | 26223581 | 1 | |
Deletion | Chr8 | 26792811 | 26792830 | 19 | |
Deletion | Chr4 | 30867235 | 30867236 | 1 |
Insertions: 4
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr2 | 17454917 | 17454918 | 2 | |
Insertion | Chr6 | 29723571 | 29723574 | 4 | |
Insertion | Chr2 | 18552694 | 18552759 | 66 | |
Insertion | Chr5 | 15337240 | 15337240 | 1 |
Inversions: 3
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr9 | 15530062 | 15530531 | |
Inversion | Chr1 | 17293337 | 17293866 | |
Inversion | Chr4 | 28530621 | 29437208 |
Translocations: 3
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr7 | 11837358 | Chr4 | 19098703 | LOC_Os07g20500 |
Translocation | Chr6 | 17270453 | Chr2 | 22538981 | |
Translocation | Chr11 | 24709440 | Chr7 | 7793849 | 2 |