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Mutant Information

Variant Information

Single base substitutions: 41

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	23677017	G-T	HET
SBS	Chr1	25732310	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g45330
SBS	Chr1	35948615	T-A	HET
SBS	Chr10	17817440	G-C	HET
SBS	Chr10	19750295	C-A	HET
SBS	Chr10	19750296	C-G	HET
SBS	Chr10	9009645	G-T	HET
SBS	Chr11	22359590	G-A	HET
SBS	Chr11	23030924	C-T	HET
SBS	Chr11	3157220	T-A	Homo
SBS	Chr11	638208	G-A	Homo
SBS	Chr12	22963573	G-T	HET
SBS	Chr12	687737	G-A	Homo
SBS	Chr2	1274534	A-T	HET
SBS	Chr2	26848277	C-T	HET
SBS	Chr3	12476343	A-G	HET
SBS	Chr3	13549787	T-A	Homo
SBS	Chr3	13549788	G-A	Homo
SBS	Chr3	17688293	A-G	HET
SBS	Chr3	32766071	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g57470
SBS	Chr3	5424612	T-C	HET
SBS	Chr4	10804501	C-A	Homo
SBS	Chr4	12301006	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g21740
SBS	Chr4	18329693	T-G	Homo
SBS	Chr4	20382711	G-A	HET
SBS	Chr4	24686294	T-C	HET
SBS	Chr4	3629176	G-T	HET
SBS	Chr4	8032979	C-G	HET
SBS	Chr5	11860525	C-T	HET	STOP_GAINED	LOC_Os05g20250
SBS	Chr5	11897357	G-T	HET
SBS	Chr5	15003882	T-C	HET
SBS	Chr6	14790062	C-T	HET
SBS	Chr6	16686816	G-T	HET
SBS	Chr6	31041864	T-A	Homo
SBS	Chr6	4484209	A-G	HET
SBS	Chr7	10238688	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os07g17340
SBS	Chr7	11895233	C-T	HET
SBS	Chr8	18815503	C-T	HET
SBS	Chr8	3163209	C-T	HET
SBS	Chr8	4525136	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g08000
SBS	Chr9	20842347	G-A	Homo

Deletions: 30

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	687680	687714	34
Deletion	Chr6	2493298	2493301	3
Deletion	Chr4	3092669	3092675	6	LOC_Os04g05970
Deletion	Chr7	4088001	4125000	36999	5
Deletion	Chr11	5621882	5621887	5
Deletion	Chr6	6493824	6493826	2
Deletion	Chr9	7990001	8019000	28999	4
Deletion	Chr9	8028001	8055000	26999	3
Deletion	Chr9	8064001	8358000	293999	32
Deletion	Chr9	8578001	8766000	187999	25
Deletion	Chr9	8774001	8797000	22999	3
Deletion	Chr9	8829001	8837000	7999
Deletion	Chr9	8849001	8926000	76999	8
Deletion	Chr9	8929001	9018000	88999	7
Deletion	Chr9	9260001	9298000	37999	2
Deletion	Chr9	9911935	9911941	6	LOC_Os09g16240
Deletion	Chr9	12912526	12912527	1
Deletion	Chr3	13843416	13843417	1	LOC_Os03g24339
Deletion	Chr6	15238670	15238690	20	LOC_Os06g26030
Deletion	Chr5	16675391	16675398	7
Deletion	Chr9	16887955	16887956	1
Deletion	Chr11	17234357	17234358	1
Deletion	Chr6	17329547	17329548	1	LOC_Os06g30070
Deletion	Chr7	21785156	21785157	1
Deletion	Chr1	21800739	21800758	19
Deletion	Chr1	21928522	21928528	6
Deletion	Chr10	22153748	22153750	2	LOC_Os10g41230
Deletion	Chr4	23082871	23082872	1
Deletion	Chr2	30585147	30585149	2
Deletion	Chr3	33293936	33293937	1

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	10449345	10449346	2
Insertion	Chr10	23114769	23114771	3	LOC_Os10g42870
Insertion	Chr12	22564309	22564309	1
Insertion	Chr2	33454857	33454857	1
Insertion	Chr6	15447616	15447617	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	1542987	1551591	LOC_Os12g03790
Inversion	Chr7	6549996	6985730
Inversion	Chr8	14534925	14548971

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	1542996	Chr4	516800	LOC_Os12g03790
Translocation	Chr3	5096470	Chr1	27526753
Translocation	Chr9	8843428	Chr7	24331917	2
Translocation	Chr7	11859814	Chr6	2921274	LOC_Os07g20530
Translocation	Chr11	19748564	Chr6	5893165	2

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