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Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr11	10767415	G-T	Homo
SBS	Chr11	11933705	C-A	Homo
SBS	Chr11	15174798	T-A	Homo
SBS	Chr11	9203891	T-G	Homo	STOP_LOST	LOC_Os11g16600
SBS	Chr11	9219695	G-A	Homo
SBS	Chr12	11858958	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g20300
SBS	Chr12	14701561	G-A	HET
SBS	Chr2	23315378	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g38570
SBS	Chr2	32720109	A-T	HET
SBS	Chr3	10731444	C-A	Homo
SBS	Chr3	33429685	A-T	HET
SBS	Chr4	27421542	C-T	HET
SBS	Chr4	30844731	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g51960
SBS	Chr4	34117341	C-A	HET
SBS	Chr4	34340251	C-T	HET
SBS	Chr4	5481404	G-A	HET
SBS	Chr5	27204629	C-T	Homo
SBS	Chr5	8331897	T-A	HET
SBS	Chr6	18086008	C-T	Homo
SBS	Chr6	20546556	G-A	Homo
SBS	Chr6	24039658	G-A	Homo
SBS	Chr6	28816751	G-T	HET
SBS	Chr7	15022755	C-T	HET
SBS	Chr7	15703170	T-C	HET
SBS	Chr7	25402485	G-T	Homo
SBS	Chr8	17953173	G-A	HET
SBS	Chr8	22702241	C-T	Homo
SBS	Chr8	7583929	C-A	HET
SBS	Chr9	1021295	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g02460
SBS	Chr9	11547133	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os09g19290
SBS	Chr9	22255449	C-A	HET

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	561254	561262	8
Deletion	Chr5	4038957	4038958	1	LOC_Os05g07540
Deletion	Chr1	6662662	6662670	8
Deletion	Chr7	7363918	7363929	11
Deletion	Chr3	11301997	11302002	5
Deletion	Chr6	12766001	12878000	111999	16
Deletion	Chr11	14469047	14469049	2
Deletion	Chr10	21781975	21781976	1
Deletion	Chr11	25080001	25272000	191999	23
Deletion	Chr11	25416001	25631000	214999	39
Deletion	Chr4	34532001	34616000	83999	17
Deletion	Chr2	35844001	35862000	17999	5
Deletion	Chr1	36787775	36787779	4

Insertions: 10

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	15748933	15748933	1
Insertion	Chr10	3923863	3923863	1
Insertion	Chr11	25692687	25692687	1
Insertion	Chr12	24691399	24691399	1	LOC_Os12g39950
Insertion	Chr4	10337162	10337162	1
Insertion	Chr4	23922180	23922212	33
Insertion	Chr5	27204454	27204455	2	LOC_Os05g47490
Insertion	Chr7	27604320	27604322	3	LOC_Os07g46260
Insertion	Chr7	4843878	4843878	1	LOC_Os07g09240
Insertion	Chr8	17446884	17446884	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	3974981	3975430	LOC_Os08g07100
Inversion	Chr1	17844293	17844841

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	8916725	Chr5	5528752
Translocation	Chr4	18885970	Chr2	21197210
Translocation	Chr7	19449063	Chr1	12115016
Translocation	Chr6	20824446	Chr1	10348162	2
Translocation	Chr10	22890526	Chr6	18908693
Translocation	Chr11	28650696	Chr7	17052118	LOC_Os11g47446
Translocation	Chr4	34970212	Chr2	22516934

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