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Mutant Information |
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Mutant Name | FN3442-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN3442-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
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Single base substitutions: 31
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr11 | 10767415 | G-T | Homo | ||
SBS | Chr11 | 11933705 | C-A | Homo | ||
SBS | Chr11 | 15174798 | T-A | Homo | ||
SBS | Chr11 | 9203891 | T-G | Homo | STOP_LOST | LOC_Os11g16600 |
SBS | Chr11 | 9219695 | G-A | Homo | ||
SBS | Chr12 | 11858958 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os12g20300 |
SBS | Chr12 | 14701561 | G-A | HET | ||
SBS | Chr2 | 23315378 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os02g38570 |
SBS | Chr2 | 32720109 | A-T | HET | ||
SBS | Chr3 | 10731444 | C-A | Homo | ||
SBS | Chr3 | 33429685 | A-T | HET | ||
SBS | Chr4 | 27421542 | C-T | HET | ||
SBS | Chr4 | 30844731 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g51960 |
SBS | Chr4 | 34117341 | C-A | HET | ||
SBS | Chr4 | 34340251 | C-T | HET | ||
SBS | Chr4 | 5481404 | G-A | HET | ||
SBS | Chr5 | 27204629 | C-T | Homo | ||
SBS | Chr5 | 8331897 | T-A | HET | ||
SBS | Chr6 | 18086008 | C-T | Homo | ||
SBS | Chr6 | 20546556 | G-A | Homo | ||
SBS | Chr6 | 24039658 | G-A | Homo | ||
SBS | Chr6 | 28816751 | G-T | HET | ||
SBS | Chr7 | 15022755 | C-T | HET | ||
SBS | Chr7 | 15703170 | T-C | HET | ||
SBS | Chr7 | 25402485 | G-T | Homo | ||
SBS | Chr8 | 17953173 | G-A | HET | ||
SBS | Chr8 | 22702241 | C-T | Homo | ||
SBS | Chr8 | 7583929 | C-A | HET | ||
SBS | Chr9 | 1021295 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os09g02460 |
SBS | Chr9 | 11547133 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os09g19290 |
SBS | Chr9 | 22255449 | C-A | HET |
Deletions: 13
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr5 | 561254 | 561262 | 8 | |
Deletion | Chr5 | 4038957 | 4038958 | 1 | LOC_Os05g07540 |
Deletion | Chr1 | 6662662 | 6662670 | 8 | |
Deletion | Chr7 | 7363918 | 7363929 | 11 | |
Deletion | Chr3 | 11301997 | 11302002 | 5 | |
Deletion | Chr6 | 12766001 | 12878000 | 111999 | 16 |
Deletion | Chr11 | 14469047 | 14469049 | 2 | |
Deletion | Chr10 | 21781975 | 21781976 | 1 | |
Deletion | Chr11 | 25080001 | 25272000 | 191999 | 23 |
Deletion | Chr11 | 25416001 | 25631000 | 214999 | 39 |
Deletion | Chr4 | 34532001 | 34616000 | 83999 | 17 |
Deletion | Chr2 | 35844001 | 35862000 | 17999 | 5 |
Deletion | Chr1 | 36787775 | 36787779 | 4 |
Insertions: 10
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr1 | 15748933 | 15748933 | 1 | |
Insertion | Chr10 | 3923863 | 3923863 | 1 | |
Insertion | Chr11 | 25692687 | 25692687 | 1 | |
Insertion | Chr12 | 24691399 | 24691399 | 1 | LOC_Os12g39950![]() |
Insertion | Chr4 | 10337162 | 10337162 | 1 | |
Insertion | Chr4 | 23922180 | 23922212 | 33 | |
Insertion | Chr5 | 27204454 | 27204455 | 2 | LOC_Os05g47490![]() |
Insertion | Chr7 | 27604320 | 27604322 | 3 | LOC_Os07g46260![]() |
Insertion | Chr7 | 4843878 | 4843878 | 1 | LOC_Os07g09240![]() |
Insertion | Chr8 | 17446884 | 17446884 | 1 |
Inversions: 2
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr8 | 3974981 | 3975430 | LOC_Os08g07100 |
Inversion | Chr1 | 17844293 | 17844841 |
Translocations: 7
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr8 | 8916725 | Chr5 | 5528752 | |
Translocation | Chr4 | 18885970 | Chr2 | 21197210 | |
Translocation | Chr7 | 19449063 | Chr1 | 12115016 | |
Translocation | Chr6 | 20824446 | Chr1 | 10348162 | 2 |
Translocation | Chr10 | 22890526 | Chr6 | 18908693 | |
Translocation | Chr11 | 28650696 | Chr7 | 17052118 | LOC_Os11g47446 |
Translocation | Chr4 | 34970212 | Chr2 | 22516934 |