Search Nipponbare


Mutant Information

Mutant NameFN3442-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN3442-S Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
(Hover to Zoom-In)


Variant Information

Single base substitutions: 31
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr1110767415G-THomo
SBSChr1111933705C-AHomo
SBSChr1115174798T-AHomo
SBSChr119203891T-GHomoSTOP_LOSTLOC_Os11g16600
SBSChr119219695G-AHomo
SBSChr1211858958C-THETNON_SYNONYMOUS_CODINGLOC_Os12g20300
SBSChr1214701561G-AHET
SBSChr223315378G-THETNON_SYNONYMOUS_CODINGLOC_Os02g38570
SBSChr232720109A-THET
SBSChr310731444C-AHomo
SBSChr333429685A-THET
SBSChr427421542C-THET
SBSChr430844731G-AHETNON_SYNONYMOUS_CODINGLOC_Os04g51960
SBSChr434117341C-AHET
SBSChr434340251C-THET
SBSChr45481404G-AHET
SBSChr527204629C-THomo
SBSChr58331897T-AHET
SBSChr618086008C-THomo
SBSChr620546556G-AHomo
SBSChr624039658G-AHomo
SBSChr628816751G-THET
SBSChr715022755C-THET
SBSChr715703170T-CHET
SBSChr725402485G-THomo
SBSChr817953173G-AHET
SBSChr822702241C-THomo
SBSChr87583929C-AHET
SBSChr91021295C-THETNON_SYNONYMOUS_CODINGLOC_Os09g02460
SBSChr911547133C-GHETNON_SYNONYMOUS_CODINGLOC_Os09g19290
SBSChr922255449C-AHET

Deletions: 13
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr55612545612628
DeletionChr5403895740389581LOC_Os05g07540
DeletionChr1666266266626708
DeletionChr77363918736392911
DeletionChr311301997113020025
DeletionChr6127660011287800011199916
DeletionChr1114469047144690492
DeletionChr1021781975217819761
DeletionChr11250800012527200019199923
DeletionChr11254160012563100021499939
DeletionChr434532001346160008399917
DeletionChr23584400135862000179995
DeletionChr136787775367877794

Insertions: 10
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr115748933157489331
InsertionChr10392386339238631
InsertionChr1125692687256926871
InsertionChr1224691399246913991LOC_Os12g39950image
InsertionChr410337162103371621
InsertionChr4239221802392221233
InsertionChr527204454272044552LOC_Os05g47490image
InsertionChr727604320276043223LOC_Os07g46260image
InsertionChr7484387848438781LOC_Os07g09240image
InsertionChr817446884174468841

Inversions: 2
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr839749813975430LOC_Os08g07100
InversionChr11784429317844841

Translocations: 7
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr88916725Chr55528752
TranslocationChr418885970Chr221197210
TranslocationChr719449063Chr112115016
TranslocationChr620824446Chr1103481622
TranslocationChr1022890526Chr618908693
TranslocationChr1128650696Chr717052118LOC_Os11g47446
TranslocationChr434970212Chr222516934