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| Mutant Information |
|---|
| Mutant Name | FN3449-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3449-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 27
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 17833819 | G-T | Homo | ||
| SBS | Chr1 | 34069117 | C-T | HET | ||
| SBS | Chr1 | 35500870 | A-G | HET | ||
| SBS | Chr10 | 1353092 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os10g03200 |
| SBS | Chr10 | 21868379 | T-A | Homo | ||
| SBS | Chr10 | 22556093 | T-C | Homo | ||
| SBS | Chr11 | 11477660 | G-A | HET | ||
| SBS | Chr11 | 11696800 | A-C | HET | ||
| SBS | Chr11 | 17995827 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g30930 |
| SBS | Chr11 | 23768054 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os11g39870 |
| SBS | Chr11 | 5908603 | C-T | HET | ||
| SBS | Chr12 | 10271759 | G-T | Homo | ||
| SBS | Chr12 | 10527597 | G-A | Homo | ||
| SBS | Chr12 | 4222971 | G-A | HET | ||
| SBS | Chr2 | 28580028 | T-C | HET | ||
| SBS | Chr2 | 32764606 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os02g53550 |
| SBS | Chr3 | 8934073 | G-A | HET | ||
| SBS | Chr5 | 19884892 | G-A | Homo | ||
| SBS | Chr5 | 6565867 | C-T | HET | ||
| SBS | Chr6 | 15310439 | T-A | HET | ||
| SBS | Chr6 | 16196322 | A-T | HET | ||
| SBS | Chr6 | 29851165 | A-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os06g49260 |
| SBS | Chr7 | 23128165 | A-T | HET | ||
| SBS | Chr8 | 13449067 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os08g22310 |
| SBS | Chr9 | 14756658 | G-A | Homo | ||
| SBS | Chr9 | 273161 | A-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os09g01340 |
| SBS | Chr9 | 5495450 | G-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os09g10080 |
Deletions: 20
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 52117 | 52149 | 32 | |
| Deletion | Chr5 | 474719 | 474723 | 4 | LOC_Os05g01780 |
| Deletion | Chr2 | 5104932 | 5104952 | 20 | |
| Deletion | Chr9 | 6078995 | 6079003 | 8 | |
| Deletion | Chr2 | 7262879 | 7262884 | 5 | |
| Deletion | Chr6 | 9820001 | 9876000 | 55999 | 7 |
| Deletion | Chr6 | 9883001 | 9956000 | 72999 | 14 |
| Deletion | Chr7 | 9900989 | 9900996 | 7 | |
| Deletion | Chr7 | 12714425 | 12714432 | 7 | |
| Deletion | Chr4 | 17139437 | 17139446 | 9 | LOC_Os04g28910 |
| Deletion | Chr11 | 18053607 | 18053630 | 23 | |
| Deletion | Chr7 | 22272403 | 22272408 | 5 | LOC_Os07g37180 |
| Deletion | Chr12 | 23393238 | 23393245 | 7 | |
| Deletion | Chr6 | 24522675 | 24522682 | 7 | |
| Deletion | Chr11 | 26664890 | 26664900 | 10 | |
| Deletion | Chr4 | 29028581 | 29028601 | 20 | |
| Deletion | Chr2 | 29647128 | 29647131 | 3 | LOC_Os02g48410 |
| Deletion | Chr2 | 34284231 | 34284235 | 4 | |
| Deletion | Chr3 | 34841609 | 34841610 | 1 | LOC_Os03g61390 |
| Deletion | Chr4 | 35074674 | 35074677 | 3 |
Insertions: 5
No Inversion
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 6664649 | Chr6 | 21870112 | 2 |
| Translocation | Chr12 | 6664911 | Chr2 | 3009121 | |
| Translocation | Chr4 | 10726466 | Chr3 | 21207034 | 2 |
| Translocation | Chr10 | 10944274 | Chr6 | 10286140 | 2 |
| Translocation | Chr12 | 11832535 | Chr3 | 15245514 | 2 |