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Mutant Information

Mutant NameFN3456-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN3456-S Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
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Variant Information

Single base substitutions: 27
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr115793169T-GHomo
SBSChr129542577G-AHET
SBSChr17323460G-AHomo
SBSChr1126312930C-THET
SBSChr1126312934G-THET
SBSChr1210246529A-THET
SBSChr210050083G-CHomo
SBSChr214784745C-GHomo
SBSChr226174125G-AHomo
SBSChr24375826C-THET
SBSChr328501288G-AHET
SBSChr332893619G-CHomo
SBSChr414547660G-AHET
SBSChr416310321A-GHET
SBSChr42611948G-THETNON_SYNONYMOUS_CODINGLOC_Os04g05240
SBSChr429166109C-THomo
SBSChr48546403C-THET
SBSChr511472987C-GHET
SBSChr518200154C-AHET
SBSChr53579783C-THomo
SBSChr57471296C-AHETSTOP_GAINEDLOC_Os05g13460
SBSChr626614641G-CHET
SBSChr828038380C-THET
SBSChr83720050G-CHomo
SBSChr83720052T-AHomo
SBSChr83720053G-THomo
SBSChr921410208C-THomoNON_SYNONYMOUS_CODINGLOC_Os09g37120

Deletions: 20
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr116213076213114LOC_Os11g02210
DeletionChr887999188000514
DeletionChr1214243651424756391
DeletionChr3159000115980007999LOC_Os03g03610
DeletionChr94337283433729512
DeletionChr2854536785453681
DeletionChr1119761611197617817
DeletionChr1213724499137245023LOC_Os12g24120
DeletionChr115864602158646075
DeletionChr41632800116357000289997
DeletionChr41637800116419000409996
DeletionChr1118872263188722696
DeletionChr120331558203315591LOC_Os01g36640
DeletionChr222191428221914324
DeletionChr9224932342249331379
DeletionChr922498583224985885
DeletionChr2239240012393700012999
DeletionChr827625588276255902
DeletionChr529421915294219161LOC_Os05g51290
DeletionChr33108000131113000329994

Insertions: 8
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr116884228168842281
InsertionChr118323242183232432LOC_Os01g33260image
InsertionChr10598552459855241
InsertionChr23261467326151650
InsertionChr2344917743449179623
InsertionChr2939595093959501
InsertionChr511146288111462881
InsertionChr526651070266510723

Inversions: 2
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr71931376319577275LOC_Os07g32460
InversionChr71931377119577275LOC_Os07g32460

Translocations: 24
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr91711614Chr332496898LOC_Os09g03470
TranslocationChr91711847Chr395629182
TranslocationChr92171228Chr210775862
TranslocationChr103120022Chr123590359
TranslocationChr105301602Chr98226721LOC_Os10g09800
TranslocationChr58422096Chr42724173
TranslocationChr89555449Chr28032157LOC_Os08g15770
TranslocationChr710504279Chr119823200
TranslocationChr1012025660Chr99357191
TranslocationChr813399838Chr77949096LOC_Os08g22210
TranslocationChr1115630258Chr93034010
TranslocationChr1016821028Chr141587176
TranslocationChr1018789317Chr331594877LOC_Os10g35180
TranslocationChr1018789319Chr331594426LOC_Os10g35180
TranslocationChr1018844997Chr1135554442
TranslocationChr1018845080Chr1135550752
TranslocationChr419175599Chr332506973
TranslocationChr419175612Chr332507213
TranslocationChr1221609233Chr57138587LOC_Os12g35540
TranslocationChr821684690Chr216774811
TranslocationChr622853265Chr1339072132
TranslocationChr1124005113Chr28611394LOC_Os11g40249
TranslocationChr427682250Chr1135554682
TranslocationChr432065675Chr335082623LOC_Os04g53810