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Mutant Information |
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Mutant Name | FN3456-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN3456-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
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Single base substitutions: 27
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 15793169 | T-G | Homo | ||
SBS | Chr1 | 29542577 | G-A | HET | ||
SBS | Chr1 | 7323460 | G-A | Homo | ||
SBS | Chr11 | 26312930 | C-T | HET | ||
SBS | Chr11 | 26312934 | G-T | HET | ||
SBS | Chr12 | 10246529 | A-T | HET | ||
SBS | Chr2 | 10050083 | G-C | Homo | ||
SBS | Chr2 | 14784745 | C-G | Homo | ||
SBS | Chr2 | 26174125 | G-A | Homo | ||
SBS | Chr2 | 4375826 | C-T | HET | ||
SBS | Chr3 | 28501288 | G-A | HET | ||
SBS | Chr3 | 32893619 | G-C | Homo | ||
SBS | Chr4 | 14547660 | G-A | HET | ||
SBS | Chr4 | 16310321 | A-G | HET | ||
SBS | Chr4 | 2611948 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g05240 |
SBS | Chr4 | 29166109 | C-T | Homo | ||
SBS | Chr4 | 8546403 | C-T | HET | ||
SBS | Chr5 | 11472987 | C-G | HET | ||
SBS | Chr5 | 18200154 | C-A | HET | ||
SBS | Chr5 | 3579783 | C-T | Homo | ||
SBS | Chr5 | 7471296 | C-A | HET | STOP_GAINED | LOC_Os05g13460 |
SBS | Chr6 | 26614641 | G-C | HET | ||
SBS | Chr8 | 28038380 | C-T | HET | ||
SBS | Chr8 | 3720050 | G-C | Homo | ||
SBS | Chr8 | 3720052 | T-A | Homo | ||
SBS | Chr8 | 3720053 | G-T | Homo | ||
SBS | Chr9 | 21410208 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os09g37120 |
Deletions: 20
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr11 | 621307 | 621311 | 4 | LOC_Os11g02210 |
Deletion | Chr8 | 879991 | 880005 | 14 | |
Deletion | Chr12 | 1424365 | 1424756 | 391 | |
Deletion | Chr3 | 1590001 | 1598000 | 7999 | LOC_Os03g03610 |
Deletion | Chr9 | 4337283 | 4337295 | 12 | |
Deletion | Chr2 | 8545367 | 8545368 | 1 | |
Deletion | Chr1 | 11976161 | 11976178 | 17 | |
Deletion | Chr12 | 13724499 | 13724502 | 3 | LOC_Os12g24120 |
Deletion | Chr1 | 15864602 | 15864607 | 5 | |
Deletion | Chr4 | 16328001 | 16357000 | 28999 | 7 |
Deletion | Chr4 | 16378001 | 16419000 | 40999 | 6 |
Deletion | Chr11 | 18872263 | 18872269 | 6 | |
Deletion | Chr1 | 20331558 | 20331559 | 1 | LOC_Os01g36640 |
Deletion | Chr2 | 22191428 | 22191432 | 4 | |
Deletion | Chr9 | 22493234 | 22493313 | 79 | |
Deletion | Chr9 | 22498583 | 22498588 | 5 | |
Deletion | Chr2 | 23924001 | 23937000 | 12999 | |
Deletion | Chr8 | 27625588 | 27625590 | 2 | |
Deletion | Chr5 | 29421915 | 29421916 | 1 | LOC_Os05g51290 |
Deletion | Chr3 | 31080001 | 31113000 | 32999 | 4 |
Insertions: 8
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr1 | 16884228 | 16884228 | 1 | |
Insertion | Chr1 | 18323242 | 18323243 | 2 | LOC_Os01g33260![]() |
Insertion | Chr10 | 5985524 | 5985524 | 1 | |
Insertion | Chr2 | 3261467 | 3261516 | 50 | |
Insertion | Chr2 | 34491774 | 34491796 | 23 | |
Insertion | Chr2 | 9395950 | 9395950 | 1 | |
Insertion | Chr5 | 11146288 | 11146288 | 1 | |
Insertion | Chr5 | 26651070 | 26651072 | 3 |
Inversions: 2
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr7 | 19313763 | 19577275 | LOC_Os07g32460 |
Inversion | Chr7 | 19313771 | 19577275 | LOC_Os07g32460 |
Translocations: 24
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr9 | 1711614 | Chr3 | 32496898 | LOC_Os09g03470 |
Translocation | Chr9 | 1711847 | Chr3 | 9562918 | 2 |
Translocation | Chr9 | 2171228 | Chr2 | 10775862 | |
Translocation | Chr10 | 3120022 | Chr1 | 23590359 | |
Translocation | Chr10 | 5301602 | Chr9 | 8226721 | LOC_Os10g09800 |
Translocation | Chr5 | 8422096 | Chr4 | 2724173 | |
Translocation | Chr8 | 9555449 | Chr2 | 8032157 | LOC_Os08g15770 |
Translocation | Chr7 | 10504279 | Chr1 | 19823200 | |
Translocation | Chr10 | 12025660 | Chr9 | 9357191 | |
Translocation | Chr8 | 13399838 | Chr7 | 7949096 | LOC_Os08g22210 |
Translocation | Chr11 | 15630258 | Chr9 | 3034010 | |
Translocation | Chr10 | 16821028 | Chr1 | 41587176 | |
Translocation | Chr10 | 18789317 | Chr3 | 31594877 | LOC_Os10g35180 |
Translocation | Chr10 | 18789319 | Chr3 | 31594426 | LOC_Os10g35180 |
Translocation | Chr10 | 18844997 | Chr1 | 13555444 | 2 |
Translocation | Chr10 | 18845080 | Chr1 | 13555075 | 2 |
Translocation | Chr4 | 19175599 | Chr3 | 32506973 | |
Translocation | Chr4 | 19175612 | Chr3 | 32507213 | |
Translocation | Chr12 | 21609233 | Chr5 | 7138587 | LOC_Os12g35540 |
Translocation | Chr8 | 21684690 | Chr2 | 16774811 | |
Translocation | Chr6 | 22853265 | Chr1 | 33907213 | 2 |
Translocation | Chr11 | 24005113 | Chr2 | 8611394 | LOC_Os11g40249 |
Translocation | Chr4 | 27682250 | Chr1 | 13555468 | 2 |
Translocation | Chr4 | 32065675 | Chr3 | 35082623 | LOC_Os04g53810 |