Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16160801	C-T	Homo
SBS	Chr1	38363885	C-A	HET
SBS	Chr10	4370219	G-C	HET
SBS	Chr10	4711620	C-T	HET
SBS	Chr10	5322024	A-T	HET
SBS	Chr10	5387746	A-G	HET
SBS	Chr11	5958420	A-G	Homo
SBS	Chr12	18193598	T-G	Homo
SBS	Chr12	24659086	T-C	Homo
SBS	Chr12	25049654	C-T	Homo
SBS	Chr2	12408536	G-A	Homo
SBS	Chr2	12408537	G-A	Homo
SBS	Chr2	13520944	C-A	Homo
SBS	Chr2	24939122	G-T	Homo
SBS	Chr2	30045575	T-A	Homo
SBS	Chr3	12634516	C-T	HET
SBS	Chr3	22825013	C-T	Homo
SBS	Chr3	24241275	A-G	Homo
SBS	Chr3	34391754	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g60500
SBS	Chr4	15433976	G-T	HET
SBS	Chr4	20396336	G-T	HET
SBS	Chr5	11000146	C-A	HET
SBS	Chr5	3108931	C-G	Homo
SBS	Chr7	21970595	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os07g36690
SBS	Chr7	8449562	C-T	HET
SBS	Chr8	5328046	T-C	Homo
SBS	Chr9	103599	C-T	HET
SBS	Chr9	15981803	A-T	Homo
SBS	Chr9	19697434	G-A	Homo
SBS	Chr9	3244742	G-C	HET

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	1636478	1636480	2
Deletion	Chr8	3315262	3315284	22
Deletion	Chr12	8459840	8459842	2
Deletion	Chr1	8667466	8667476	10
Deletion	Chr4	10492001	10513000	20999	4
Deletion	Chr2	10623255	10623256	1	LOC_Os02g18310
Deletion	Chr3	12159601	12159604	3
Deletion	Chr9	13452843	13452860	17
Deletion	Chr5	15152415	15152420	5
Deletion	Chr9	15981556	15981558	2
Deletion	Chr5	16517700	16517704	4
Deletion	Chr6	19315397	19315405	8
Deletion	Chr9	20141017	20141035	18
Deletion	Chr1	22567184	22567195	11	LOC_Os01g40010
Deletion	Chr3	23209001	23302000	92999	15
Deletion	Chr2	23403648	23403655	7	LOC_Os02g38710
Deletion	Chr12	24771021	24771025	4	LOC_Os12g40060
Deletion	Chr4	27808933	27808935	2
Deletion	Chr2	29242337	29242358	21

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	14447578	14447578	1
Insertion	Chr11	25634717	25634731	15	LOC_Os11g42590
Insertion	Chr3	24787286	24787286	1
Insertion	Chr3	7619538	7619539	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	33152544	33547460	2

Translocations: 11

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	10279515	Chr1	2400163
Translocation	Chr9	10370589	Chr4	14572701
Translocation	Chr4	10492753	Chr2	33152557	2
Translocation	Chr7	13266424	Chr6	12543361	2
Translocation	Chr10	13534722	Chr2	33547477	2
Translocation	Chr10	13534738	Chr2	33547818	2
Translocation	Chr4	16253992	Chr1	36877925
Translocation	Chr4	18593875	Chr2	33131355	2
Translocation	Chr4	18593884	Chr2	33546683	LOC_Os04g31090
Translocation	Chr6	23599204	Chr2	16073111
Translocation	Chr12	27066895	Chr7	4745392

Main menu