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Mutant Information

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3905569	T-A	Homo
SBS	Chr2	26740546	G-A	Homo
SBS	Chr2	29759412	A-G	HET
SBS	Chr3	7394975	T-A	HET
SBS	Chr3	10295894	T-A	HET
SBS	Chr3	14795365	A-G	Homo
SBS	Chr3	35032179	A-C	Homo
SBS	Chr4	11535953	T-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g20610
SBS	Chr4	15399080	C-G	Homo
SBS	Chr4	17120455	G-A	Homo	STOP_GAINED	LOC_Os04g28880
SBS	Chr5	2577208	T-G	HET
SBS	Chr5	2894914	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g05800
SBS	Chr5	15383864	A-T	Homo
SBS	Chr6	9771489	G-A	Homo
SBS	Chr6	14270898	C-T	Homo
SBS	Chr6	22493760	A-T	HET
SBS	Chr6	23340508	G-T	Homo
SBS	Chr7	3980232	C-G	HET
SBS	Chr7	26674590	T-C	Homo
SBS	Chr8	10206651	G-C	Homo
SBS	Chr8	24286990	A-G	HET
SBS	Chr9	2751278	C-T	HET
SBS	Chr9	8223719	C-T	Homo
SBS	Chr9	21714564	T-C	HET
SBS	Chr11	3907008	C-T	HET
SBS	Chr11	10483476	C-G	Homo
SBS	Chr11	14348713	A-G	Homo
SBS	Chr11	18146449	T-C	Homo
SBS	Chr11	26563864	C-T	Homo
SBS	Chr12	1324025	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os12g03410
SBS	Chr12	8055511	G-A	HET
SBS	Chr12	9645747	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g16820
SBS	Chr12	20444974	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g33910
SBS	Chr12	22431133	C-T	HET
SBS	Chr12	26010003	C-T	HET

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	2737049	2737050	1	LOC_Os09g05080
Deletion	Chr5	3035001	3153000	117999	17
Deletion	Chr10	3793001	3815000	21999	2
Deletion	Chr6	10454549	10454556	7
Deletion	Chr8	12985850	12986006	156
Deletion	Chr11	15593063	15593066	3
Deletion	Chr4	17119663	17119672	9	LOC_Os04g28880
Deletion	Chr4	20365295	20365326	31
Deletion	Chr4	21179046	21179063	17	LOC_Os04g34880
Deletion	Chr7	21501600	21501616	16
Deletion	Chr11	22114605	22114609	4
Deletion	Chr7	23624235	23624240	5
Deletion	Chr4	23824349	23824359	10
Deletion	Chr2	23914001	23939000	24999	LOC_Os02g39640
Deletion	Chr4	26936001	27001000	64999	12

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr8	8130054	8130056	3
Insertion	Chr2	24758615	24758615	1
Insertion	Chr5	12775513	12775513	1
Insertion	Chr7	24552898	24552898	1
Insertion	Chr11	7848889	7848889	1
Insertion	Chr11	16230816	16230816	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	6495314	6495511	LOC_Os08g11030
Inversion	Chr10	7794683	8027190	2

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	842831	Chr1	17044172	2
Translocation	Chr11	3679677	Chr8	1216226
Translocation	Chr7	7994271	Chr4	24732557	2
Translocation	Chr11	23724653	Chr4	5910471
Translocation	Chr4	27415430	Chr1	33788767	2
Translocation	Chr4	27415450	Chr1	33635166	2

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