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Mutant Information

Variant Information

Single base substitutions: 40

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11502980	A-G	HET
SBS	Chr1	14495989	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g25580
SBS	Chr1	30768950	A-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g53580
SBS	Chr1	32411948	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g56270
SBS	Chr1	32836306	G-A	Homo
SBS	Chr1	35048375	C-A	Homo
SBS	Chr1	7435409	T-A	HET
SBS	Chr1	7435410	T-A	HET
SBS	Chr1	7435411	C-T	HET
SBS	Chr1	9401968	C-A	HET
SBS	Chr10	5222211	T-C	HET
SBS	Chr11	15587114	A-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os11g27080
SBS	Chr11	26880375	G-C	HET
SBS	Chr12	14512718	T-C	HET
SBS	Chr2	11717785	G-A	Homo
SBS	Chr2	5721930	G-A	HET
SBS	Chr3	11206034	A-G	Homo
SBS	Chr3	17257358	C-T	HET
SBS	Chr3	1759358	T-C	HET
SBS	Chr3	19241144	G-A	HET
SBS	Chr3	35253555	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g62240
SBS	Chr4	32971452	C-T	HET
SBS	Chr4	3936467	G-A	HET
SBS	Chr4	4549862	G-T	HET
SBS	Chr4	4550949	G-T	HET
SBS	Chr5	12140692	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g20710
SBS	Chr5	26333603	T-C	Homo
SBS	Chr5	29330647	G-A	Homo
SBS	Chr5	9193047	T-A	Homo
SBS	Chr6	13224588	G-A	HET
SBS	Chr6	14310268	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g24420
SBS	Chr6	22350302	C-T	Homo
SBS	Chr6	24892699	C-T	HET
SBS	Chr6	26297662	T-C	HET
SBS	Chr6	8615563	T-G	HET
SBS	Chr7	28594862	A-G	HET
SBS	Chr7	29201768	G-C	HET
SBS	Chr8	21690160	T-A	HET
SBS	Chr8	7970929	C-A	HET
SBS	Chr9	3100253	C-A	HET

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	3780001	3853000	72999	16
Deletion	Chr8	3856001	3875000	18999	4
Deletion	Chr8	3885001	4051000	165999	24
Deletion	Chr8	4001662	4001676	14
Deletion	Chr8	4056001	4121000	64999	9
Deletion	Chr6	5434641	5434645	4
Deletion	Chr11	8557428	8557431	3
Deletion	Chr9	10467393	10467395	2
Deletion	Chr4	12169992	12170048	56
Deletion	Chr4	12843857	12843862	5
Deletion	Chr9	13718811	13718828	17
Deletion	Chr1	14680467	14680476	9	LOC_Os01g25880
Deletion	Chr11	15590996	15590998	2
Deletion	Chr2	15942001	15949000	6999	LOC_Os02g27110
Deletion	Chr2	16321294	16321301	7
Deletion	Chr3	17289654	17289667	13
Deletion	Chr10	18696259	18696263	4
Deletion	Chr2	19152766	19152767	1
Deletion	Chr1	22176861	22176865	4	LOC_Os01g39380
Deletion	Chr10	22341001	22361000	19999
Deletion	Chr3	23928888	23928898	10
Deletion	Chr11	23979076	23979087	11	LOC_Os11g40200
Deletion	Chr12	25765518	25765535	17
Deletion	Chr8	26438808	26438809	1
Deletion	Chr3	33396424	33396429	5
Deletion	Chr1	39980291	39980292	1

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	15399535	15399611	77
Insertion	Chr3	22882232	22882233	2
Insertion	Chr7	28347192	28347193	2	LOC_Os07g47410

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	24755189	24796948	2
Inversion	Chr7	24994819	25001518	LOC_Os07g41710

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	8586441	Chr1	40408590	2
Translocation	Chr3	8591774	Chr1	40408611	2
Translocation	Chr5	14750524	Chr1	16483830	2
Translocation	Chr5	14750868	Chr1	16483840	2
Translocation	Chr9	20960122	Chr1	4271568	LOC_Os09g36310
Translocation	Chr9	20960456	Chr1	4271562	LOC_Os09g36310
Translocation	Chr11	26619552	Chr10	2078384	2

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