Search Nipponbare


Mutant Information

Mutant NameFN3478-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN3478-S Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
(Hover to Zoom-In)


Variant Information

Single base substitutions: 28
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr128838909T-CHET
SBSChr17031225G-AHET
SBSChr1016647889G-CHET
SBSChr1022714062T-CHETNON_SYNONYMOUS_CODINGLOC_Os10g42202
SBSChr1022827630C-THET
SBSChr1022897440T-CHETNON_SYNONYMOUS_CODINGLOC_Os10g42470
SBSChr103198498C-GHomo
SBSChr1111681298C-THomo
SBSChr1115940796C-THomo
SBSChr1215975498C-THET
SBSChr220212566A-GHET
SBSChr228193151C-THomo
SBSChr228195617T-CHomo
SBSChr31808636G-AHomo
SBSChr325516861C-THomo
SBSChr412740417G-THET
SBSChr617364850G-AHET
SBSChr623008838G-AHET
SBSChr628780606A-THET
SBSChr710666097C-THET
SBSChr719266452C-AHET
SBSChr719699523C-THET
SBSChr721903012G-AHETNON_SYNONYMOUS_CODINGLOC_Os07g36610
SBSChr77198081G-THET
SBSChr810859833C-THETNON_SYNONYMOUS_CODINGLOC_Os08g17750
SBSChr827726962A-THET
SBSChr91656772T-GHET
SBSChr9942229T-CHET

Deletions: 20
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr31586001160000013999LOC_Os03g03610
DeletionChr9248339824834035LOC_Os09g04660
DeletionChr7558696755869681
DeletionChr12566586456658673
DeletionChr98921310892132414
DeletionChr10903071190307143LOC_Os10g17850
DeletionChr510165622101656231
DeletionChr71034500110370000249995
DeletionChr51036100110373000119992
DeletionChr5103760011062200024599935
DeletionChr51062700110679000519996
DeletionChr51075100110825000739997
DeletionChr9109214801092151131
DeletionChr912941650129416522LOC_Os09g21420
DeletionChr413072197130721992
DeletionChr914806864148068662
DeletionChr12159717641597177511
DeletionChr1121083952210839531
DeletionChr4303714543037147016
DeletionChr434221454342214562

Insertions: 1
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr917624438176244403LOC_Os09g28990image

Inversions: 4
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr510158990103610732
InversionChr1118635544188859952
InversionChr1118635760188860012
InversionChr419449360194997592

Translocations: 10
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr102607375Chr615332606LOC_Os10g05270
TranslocationChr123427962Chr1118635753LOC_Os12g07000
TranslocationChr123427969Chr1118635548LOC_Os12g07000
TranslocationChr79977855Chr219708342LOC_Os07g16960
TranslocationChr710373163Chr4194997632
TranslocationChr710375322Chr4194493622
TranslocationChr1214643766Chr5262222732
TranslocationChr1214643817Chr5262214192
TranslocationChr817680095Chr524648620
TranslocationChr817680101Chr524649106