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Mutant Information |
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Mutant Name | FN3478-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN3478-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
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Single base substitutions: 28
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 28838909 | T-C | HET | ||
SBS | Chr1 | 7031225 | G-A | HET | ||
SBS | Chr10 | 16647889 | G-C | HET | ||
SBS | Chr10 | 22714062 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os10g42202 |
SBS | Chr10 | 22827630 | C-T | HET | ||
SBS | Chr10 | 22897440 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os10g42470 |
SBS | Chr10 | 3198498 | C-G | Homo | ||
SBS | Chr11 | 11681298 | C-T | Homo | ||
SBS | Chr11 | 15940796 | C-T | Homo | ||
SBS | Chr12 | 15975498 | C-T | HET | ||
SBS | Chr2 | 20212566 | A-G | HET | ||
SBS | Chr2 | 28193151 | C-T | Homo | ||
SBS | Chr2 | 28195617 | T-C | Homo | ||
SBS | Chr3 | 1808636 | G-A | Homo | ||
SBS | Chr3 | 25516861 | C-T | Homo | ||
SBS | Chr4 | 12740417 | G-T | HET | ||
SBS | Chr6 | 17364850 | G-A | HET | ||
SBS | Chr6 | 23008838 | G-A | HET | ||
SBS | Chr6 | 28780606 | A-T | HET | ||
SBS | Chr7 | 10666097 | C-T | HET | ||
SBS | Chr7 | 19266452 | C-A | HET | ||
SBS | Chr7 | 19699523 | C-T | HET | ||
SBS | Chr7 | 21903012 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os07g36610 |
SBS | Chr7 | 7198081 | G-T | HET | ||
SBS | Chr8 | 10859833 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os08g17750 |
SBS | Chr8 | 27726962 | A-T | HET | ||
SBS | Chr9 | 1656772 | T-G | HET | ||
SBS | Chr9 | 942229 | T-C | HET |
Deletions: 20
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr3 | 1586001 | 1600000 | 13999 | LOC_Os03g03610 |
Deletion | Chr9 | 2483398 | 2483403 | 5 | LOC_Os09g04660 |
Deletion | Chr7 | 5586967 | 5586968 | 1 | |
Deletion | Chr12 | 5665864 | 5665867 | 3 | |
Deletion | Chr9 | 8921310 | 8921324 | 14 | |
Deletion | Chr10 | 9030711 | 9030714 | 3 | LOC_Os10g17850 |
Deletion | Chr5 | 10165622 | 10165623 | 1 | |
Deletion | Chr7 | 10345001 | 10370000 | 24999 | 5 |
Deletion | Chr5 | 10361001 | 10373000 | 11999 | 2 |
Deletion | Chr5 | 10376001 | 10622000 | 245999 | 35 |
Deletion | Chr5 | 10627001 | 10679000 | 51999 | 6 |
Deletion | Chr5 | 10751001 | 10825000 | 73999 | 7 |
Deletion | Chr9 | 10921480 | 10921511 | 31 | |
Deletion | Chr9 | 12941650 | 12941652 | 2 | LOC_Os09g21420 |
Deletion | Chr4 | 13072197 | 13072199 | 2 | |
Deletion | Chr9 | 14806864 | 14806866 | 2 | |
Deletion | Chr12 | 15971764 | 15971775 | 11 | |
Deletion | Chr11 | 21083952 | 21083953 | 1 | |
Deletion | Chr4 | 30371454 | 30371470 | 16 | |
Deletion | Chr4 | 34221454 | 34221456 | 2 |
Insertions: 1
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr9 | 17624438 | 17624440 | 3 | LOC_Os09g28990![]() |
Inversions: 4
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr5 | 10158990 | 10361073 | 2 |
Inversion | Chr11 | 18635544 | 18885995 | 2 |
Inversion | Chr11 | 18635760 | 18886001 | 2 |
Inversion | Chr4 | 19449360 | 19499759 | 2 |
Translocations: 10
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr10 | 2607375 | Chr6 | 15332606 | LOC_Os10g05270 |
Translocation | Chr12 | 3427962 | Chr11 | 18635753 | LOC_Os12g07000 |
Translocation | Chr12 | 3427969 | Chr11 | 18635548 | LOC_Os12g07000 |
Translocation | Chr7 | 9977855 | Chr2 | 19708342 | LOC_Os07g16960 |
Translocation | Chr7 | 10373163 | Chr4 | 19499763 | 2 |
Translocation | Chr7 | 10375322 | Chr4 | 19449362 | 2 |
Translocation | Chr12 | 14643766 | Chr5 | 26222273 | 2 |
Translocation | Chr12 | 14643817 | Chr5 | 26221419 | 2 |
Translocation | Chr8 | 17680095 | Chr5 | 24648620 | |
Translocation | Chr8 | 17680101 | Chr5 | 24649106 |