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| Mutant Information |
|---|
| Mutant Name | FN3487-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3487-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 27
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 19671802 | G-A | HET | ||
| SBS | Chr1 | 37573876 | T-C | Homo | ||
| SBS | Chr10 | 2254065 | A-T | Homo | ||
| SBS | Chr10 | 4233995 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os10g07622 |
| SBS | Chr10 | 5282663 | T-A | HET | ||
| SBS | Chr11 | 25663152 | C-T | HET | ||
| SBS | Chr12 | 16302243 | C-T | Homo | ||
| SBS | Chr12 | 24197317 | G-A | HET | ||
| SBS | Chr2 | 33238494 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os02g54210 |
| SBS | Chr3 | 18553565 | C-A | HET | ||
| SBS | Chr3 | 26484048 | T-G | HET | ||
| SBS | Chr3 | 30573871 | A-T | HET | ||
| SBS | Chr3 | 34757200 | G-A | HET | ||
| SBS | Chr4 | 8122680 | G-A | Homo | ||
| SBS | Chr5 | 10567196 | G-C | HET | ||
| SBS | Chr5 | 27836551 | C-T | Homo | ||
| SBS | Chr5 | 27836553 | C-T | Homo | ||
| SBS | Chr6 | 17925805 | A-T | HET | ||
| SBS | Chr7 | 16405781 | G-A | HET | ||
| SBS | Chr7 | 27946528 | C-T | Homo | ||
| SBS | Chr7 | 27946529 | A-T | Homo | ||
| SBS | Chr8 | 12797772 | G-A | HET | ||
| SBS | Chr8 | 25226976 | G-C | Homo | ||
| SBS | Chr8 | 5804276 | G-A | HET | ||
| SBS | Chr8 | 5867293 | G-C | HET | ||
| SBS | Chr9 | 21398825 | A-G | HET | ||
| SBS | Chr9 | 9740365 | G-A | HET |
Deletions: 19
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr11 | 4474001 | 4687000 | 212999 | 33 |
| Deletion | Chr6 | 6217921 | 6217928 | 7 | |
| Deletion | Chr2 | 7130071 | 7130073 | 2 | |
| Deletion | Chr5 | 7263194 | 7263195 | 1 | |
| Deletion | Chr9 | 10154532 | 10154549 | 17 | LOC_Os09g16540 |
| Deletion | Chr8 | 10307829 | 10307831 | 2 | |
| Deletion | Chr7 | 10341129 | 10341139 | 10 | |
| Deletion | Chr12 | 12459536 | 12459537 | 1 | |
| Deletion | Chr10 | 13996001 | 14137000 | 140999 | 12 |
| Deletion | Chr12 | 16502169 | 16502176 | 7 | |
| Deletion | Chr10 | 17065245 | 17065260 | 15 | LOC_Os10g32570 |
| Deletion | Chr2 | 18041544 | 18041558 | 14 | |
| Deletion | Chr4 | 22233320 | 22233328 | 8 | |
| Deletion | Chr12 | 22662435 | 22662436 | 1 | LOC_Os12g36950 |
| Deletion | Chr5 | 23416921 | 23416922 | 1 | |
| Deletion | Chr7 | 27779871 | 27779899 | 28 | |
| Deletion | Chr7 | 27894308 | 27894309 | 1 | |
| Deletion | Chr4 | 29122517 | 29122522 | 5 | LOC_Os04g48830 |
| Deletion | Chr1 | 35222378 | 35222386 | 8 |
Insertions: 5
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 36382996 | 36382999 | 4 | |
| Insertion | Chr11 | 21550560 | 21550563 | 4 | |
| Insertion | Chr4 | 2067626 | 2067626 | 1 | |
| Insertion | Chr8 | 1870609 | 1870609 | 1 | LOC_Os08g03930 |
| Insertion | Chr9 | 12827624 | 12827626 | 3 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr11 | 577383 | 592895 | 2 |
| Inversion | Chr11 | 577447 | 593267 | 2 |
| Inversion | Chr11 | 4404959 | 4477733 | 2 |
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 25370427 | Chr8 | 15270537 | |
| Translocation | Chr7 | 26057646 | Chr1 | 10500976 |