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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5375274	G-A	Homo
SBS	Chr1	14493167	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g25580
SBS	Chr2	6240090	G-T	HET
SBS	Chr2	6240091	G-T	HET
SBS	Chr2	17775595	A-T	Homo
SBS	Chr2	17775596	A-T	Homo
SBS	Chr2	17775597	G-T	Homo
SBS	Chr3	487107	C-T	Homo
SBS	Chr3	18687970	T-C	Homo
SBS	Chr3	33881662	A-G	HET
SBS	Chr4	10891672	G-A	Homo
SBS	Chr4	35159243	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g59100
SBS	Chr6	11374790	T-A	HET
SBS	Chr6	11837088	G-C	HET
SBS	Chr6	15619361	C-T	HET	STOP_GAINED	LOC_Os06g27600
SBS	Chr6	19463369	C-T	HET
SBS	Chr6	25091440	A-T	Homo
SBS	Chr7	2738610	C-T	HET
SBS	Chr7	15662842	T-A	Homo
SBS	Chr8	10000723	C-A	Homo
SBS	Chr9	9235241	T-G	HET
SBS	Chr9	9243188	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g15220
SBS	Chr9	9243190	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g15220
SBS	Chr9	10850315	C-T	HET
SBS	Chr10	633868	T-A	HET
SBS	Chr10	10721156	T-A	HET
SBS	Chr10	15807017	T-C	Homo
SBS	Chr10	15807026	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g30410
SBS	Chr11	186513	C-T	HET
SBS	Chr11	13486782	C-T	Homo
SBS	Chr11	17345185	A-G	HET
SBS	Chr12	4999622	C-G	HET
SBS	Chr12	16284317	C-T	HET

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	594543	594551	8
Deletion	Chr7	672001	786000	113999	19
Deletion	Chr6	1273654	1273672	18
Deletion	Chr7	3407927	3407928	1
Deletion	Chr2	4015001	4141000	125999	21
Deletion	Chr1	6068268	6068269	1
Deletion	Chr4	12158426	12158433	7	LOC_Os04g21500
Deletion	Chr8	13925288	13925298	10
Deletion	Chr1	18944247	18944257	10	LOC_Os01g34350
Deletion	Chr9	19177732	19177735	3
Deletion	Chr3	25112131	25112132	1
Deletion	Chr1	25544001	25567000	22999	3
Deletion	Chr1	25571001	25635000	63999	13
Deletion	Chr7	29086688	29086689	1
Deletion	Chr2	29140617	29140624	7
Deletion	Chr4	30850001	30861000	10999	2
Deletion	Chr2	32692759	32692767	8
Deletion	Chr1	33912299	33912303	4
Deletion	Chr4	34832270	34832271	1
Deletion	Chr1	38165152	38165161	9

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr4	14166662	14166663	2
Insertion	Chr4	27485279	27485288	10
Insertion	Chr12	23693715	23693716	2
Insertion	Chr1	1213455	1213460	6
Insertion	Chr5	5661449	5661449	1
Insertion	Chr11	17536668	17536668	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	12774865	12903188	LOC_Os12g22610
Inversion	Chr12	12777199	12903193	LOC_Os12g22610
Inversion	Chr5	19314821	19809031
Inversion	Chr6	25087126	25943753	LOC_Os06g41840

Translocations: 12

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	1003684	Chr3	15239893	2
Translocation	Chr2	4011308	Chr1	25546675	2
Translocation	Chr2	4141358	Chr1	25537348	2
Translocation	Chr2	5286695	Chr1	25905213
Translocation	Chr2	6240285	Chr1	25905088
Translocation	Chr9	8228159	Chr5	8546761
Translocation	Chr6	10177701	Chr2	13594352
Translocation	Chr8	10904277	Chr6	31115349	LOC_Os08g17784
Translocation	Chr8	16820588	Chr4	10714575	LOC_Os08g27590
Translocation	Chr6	25087156	Chr5	27395775	LOC_Os06g41840
Translocation	Chr6	25943761	Chr5	27392575
Translocation	Chr3	29194440	Chr1	31269094

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