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| Mutant Information |
|---|
| Mutant Name | FN3492-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3492-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 33
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 14160013 | G-T | Homo | ||
| SBS | Chr1 | 34936577 | C-G | HET | ||
| SBS | Chr1 | 42555946 | A-T | HET | ||
| SBS | Chr10 | 15296189 | G-A | HET | ||
| SBS | Chr10 | 9689829 | A-T | HET | ||
| SBS | Chr11 | 236114 | C-T | Homo | STOP_GAINED | LOC_Os11g01380 |
| SBS | Chr12 | 16737762 | G-A | HET | ||
| SBS | Chr2 | 10774414 | C-A | HET | ||
| SBS | Chr2 | 13226640 | C-T | HET | ||
| SBS | Chr2 | 26324983 | A-G | HET | ||
| SBS | Chr2 | 31798638 | C-A | HET | ||
| SBS | Chr2 | 31798640 | A-G | HET | ||
| SBS | Chr2 | 4831052 | T-A | Homo | ||
| SBS | Chr2 | 8701545 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os02g15520 |
| SBS | Chr3 | 13504449 | G-T | Homo | ||
| SBS | Chr3 | 17466896 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g30620 |
| SBS | Chr3 | 6623522 | G-A | HET | ||
| SBS | Chr3 | 9927551 | C-G | HET | ||
| SBS | Chr4 | 17436984 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os04g29350 |
| SBS | Chr4 | 3396834 | T-C | HET | ||
| SBS | Chr5 | 26823923 | G-A | HET | ||
| SBS | Chr5 | 29066886 | G-A | HET | ||
| SBS | Chr6 | 2623447 | C-T | HET | ||
| SBS | Chr7 | 12558990 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os07g22380 |
| SBS | Chr7 | 1599854 | A-T | HET | ||
| SBS | Chr7 | 28706966 | T-A | Homo | ||
| SBS | Chr8 | 10197079 | C-T | Homo | ||
| SBS | Chr8 | 15512249 | A-G | Homo | ||
| SBS | Chr8 | 22132865 | C-A | Homo | ||
| SBS | Chr8 | 23987667 | A-G | HET | ||
| SBS | Chr8 | 24522943 | G-A | HET | ||
| SBS | Chr9 | 13244488 | G-T | Homo | ||
| SBS | Chr9 | 8330241 | A-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os09g14070 |
Deletions: 22
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 323474 | 323481 | 7 | LOC_Os12g01530 |
| Deletion | Chr12 | 1454898 | 1454902 | 4 | LOC_Os12g03630 |
| Deletion | Chr7 | 3277872 | 3277875 | 3 | |
| Deletion | Chr12 | 5268794 | 5268799 | 5 | LOC_Os12g09970 |
| Deletion | Chr2 | 5480548 | 5480560 | 12 | LOC_Os02g10430 |
| Deletion | Chr3 | 5521162 | 5521174 | 12 | |
| Deletion | Chr11 | 6176085 | 6176092 | 7 | |
| Deletion | Chr4 | 7127616 | 7127617 | 1 | |
| Deletion | Chr5 | 7968093 | 7968103 | 10 | LOC_Os05g14210 |
| Deletion | Chr4 | 8557904 | 8557917 | 13 | |
| Deletion | Chr4 | 8614586 | 8614593 | 7 | LOC_Os04g15880 |
| Deletion | Chr5 | 13172182 | 13172198 | 16 | |
| Deletion | Chr6 | 14215155 | 14215156 | 1 | |
| Deletion | Chr9 | 19079001 | 19326000 | 246999 | 40 |
| Deletion | Chr12 | 19634283 | 19634289 | 6 | LOC_Os12g32530 |
| Deletion | Chr6 | 20775311 | 20775312 | 1 | |
| Deletion | Chr4 | 23246001 | 23262000 | 15999 | |
| Deletion | Chr4 | 23293863 | 23293868 | 5 | |
| Deletion | Chr3 | 23863612 | 23863613 | 1 | |
| Deletion | Chr12 | 26237106 | 26237110 | 4 | |
| Deletion | Chr2 | 34028314 | 34028316 | 2 | |
| Deletion | Chr1 | 37213363 | 37213368 | 5 | LOC_Os01g64070 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 22622503 | 22622504 | 2 | |
| Insertion | Chr12 | 20711488 | 20711489 | 2 | |
| Insertion | Chr7 | 1229160 | 1229215 | 56 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr4 | 14632528 | 15191034 |
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr2 | 16659498 | Chr1 | 23143179 | |
| Translocation | Chr3 | 22965372 | Chr2 | 474247 | LOC_Os03g41300 |