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Mutant Information

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	30462613	A-G	HET
SBS	Chr1	40171836	C-T	HET
SBS	Chr10	20053257	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g37468
SBS	Chr11	12896705	G-C	Homo
SBS	Chr11	1543117	C-A	Homo
SBS	Chr12	14761777	T-C	HET
SBS	Chr12	25198545	T-A	Homo
SBS	Chr12	8617892	A-C	HET
SBS	Chr2	3579220	G-A	HET
SBS	Chr3	24716638	G-T	Homo
SBS	Chr3	24874723	A-G	HET
SBS	Chr3	24891905	G-A	Homo
SBS	Chr3	266461	T-G	HET
SBS	Chr4	19166494	C-G	HET
SBS	Chr4	32899475	C-T	HET
SBS	Chr4	33639617	A-G	Homo
SBS	Chr5	14794105	G-C	HET
SBS	Chr5	16736557	T-A	HET
SBS	Chr5	5492909	A-C	HET
SBS	Chr6	10602566	C-T	Homo
SBS	Chr8	26323932	T-C	HET
SBS	Chr8	26449260	G-C	HET
SBS	Chr8	300448	A-G	Homo
SBS	Chr8	4115814	T-C	Homo
SBS	Chr9	18585360	C-G	Homo
SBS	Chr9	18897080	C-T	Homo
SBS	Chr9	5893682	C-A	HET
SBS	Chr9	643220	C-A	HET

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	1116956	1116962	6
Deletion	Chr5	1205001	1223000	17999	2
Deletion	Chr9	5366001	5856000	489999	83
Deletion	Chr10	5901719	5901724	5	LOC_Os10g10680
Deletion	Chr7	6837035	6837051	16
Deletion	Chr7	9948262	9948282	20
Deletion	Chr10	10887501	10887502	1
Deletion	Chr6	12733345	12733346	1
Deletion	Chr5	12880529	12880534	5
Deletion	Chr4	13393452	13393458	6
Deletion	Chr5	16525001	16560000	34999	7
Deletion	Chr8	16576616	16576617	1
Deletion	Chr10	17729254	17729256	2
Deletion	Chr7	18249996	18250001	5
Deletion	Chr9	18583835	18583845	10
Deletion	Chr10	18609001	18620000	10999	2
Deletion	Chr8	20490212	20490222	10
Deletion	Chr1	22707001	22729000	21999	2
Deletion	Chr3	24821844	24821857	13
Deletion	Chr2	24967506	24967515	9
Deletion	Chr1	25180949	25180953	4
Deletion	Chr4	26407001	26417000	9999	2
Deletion	Chr5	27850188	27850211	23	LOC_Os05g48590
Deletion	Chr6	28211001	28225000	13999	LOC_Os06g46475
Deletion	Chr1	29654001	29671000	16999	3
Deletion	Chr4	30262830	30262842	12	LOC_Os04g51090
Deletion	Chr4	30450572	30450589	17
Deletion	Chr3	30796710	30796713	3	LOC_Os03g53710

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	614200	614201	2
Insertion	Chr1	875312	875312	1
Insertion	Chr12	25174117	25174118	2
Insertion	Chr3	2193515	2193515	1
Insertion	Chr6	19620837	19620837	1	LOC_Os06g33720
Insertion	Chr9	12783356	12783358	3
Insertion	Chr9	14806864	14806865	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	12982487	12982846

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	3381506	Chr3	20592854	2
Translocation	Chr9	3381671	Chr3	20592861	2
Translocation	Chr11	6690668	Chr1	43063078	LOC_Os11g12020
Translocation	Chr11	8398561	Chr1	43063852	2
Translocation	Chr8	9912028	Chr3	23252460
Translocation	Chr8	13525340	Chr6	23975322	2
Translocation	Chr6	23207489	Chr2	17614215	LOC_Os06g39090

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