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Mutant Information

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12141946	A-T	Homo
SBS	Chr1	14548343	C-T	Homo
SBS	Chr1	16674060	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g29760
SBS	Chr1	21442377	G-A	Homo
SBS	Chr1	24665422	A-C	HET
SBS	Chr1	29914835	T-C	HET
SBS	Chr1	30939383	A-G	HET
SBS	Chr1	31383700	A-C	HET
SBS	Chr10	11456350	A-T	Homo
SBS	Chr11	5278830	T-A	Homo
SBS	Chr12	25424253	A-G	Homo
SBS	Chr2	13138443	C-A	Homo
SBS	Chr2	13375907	C-G	Homo	SPLICE_SITE_ACCEPTOR	LOC_Os02g22390
SBS	Chr2	13576936	G-A	Homo
SBS	Chr2	20209049	G-A	HET
SBS	Chr2	24920987	C-T	HET
SBS	Chr2	28907047	G-A	Homo
SBS	Chr2	999902	G-A	HET
SBS	Chr3	19995096	A-G	HET
SBS	Chr3	28352372	C-T	Homo
SBS	Chr3	3312467	G-A	HET
SBS	Chr4	7785068	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g13930
SBS	Chr5	5949873	C-T	HET
SBS	Chr5	9909008	C-G	HET
SBS	Chr7	26347161	T-A	Homo
SBS	Chr7	27853630	T-A	Homo
SBS	Chr8	2204421	C-A	HET
SBS	Chr8	5706088	C-T	Homo
SBS	Chr9	2992485	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os09g06360

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	1204001	1223000	18999	2
Deletion	Chr1	2238144	2238152	8
Deletion	Chr3	3337300	3337301	1
Deletion	Chr4	5548338	5548339	1	LOC_Os04g10270
Deletion	Chr3	7339562	7339565	3
Deletion	Chr6	7813942	7813948	6
Deletion	Chr8	9140001	9149000	8999
Deletion	Chr1	9498001	9511000	12999	2
Deletion	Chr1	13247001	13261000	13999	LOC_Os01g23590
Deletion	Chr2	15062019	15062023	4	LOC_Os02g25720
Deletion	Chr9	18494317	18494319	2	LOC_Os09g30380
Deletion	Chr2	20697209	20697211	2
Deletion	Chr10	21580107	21580108	1	LOC_Os10g40260
Deletion	Chr3	22313001	22321000	7999	LOC_Os03g40160
Deletion	Chr10	22337001	22366000	28999	LOC_Os10g41560
Deletion	Chr4	23248001	23262000	13999
Deletion	Chr4	26408001	26417000	8999	2
Deletion	Chr6	28213001	28226000	12999
Deletion	Chr8	28232275	28232276	1
Deletion	Chr1	29653001	29670000	16999	3

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr4	16081630	16081632	3	LOC_Os04g27210
Insertion	Chr5	3846969	3846970	2
Insertion	Chr6	13904097	13904098	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	17844293	17844841
Inversion	Chr12	19754966	19808554	2
Inversion	Chr6	28361759	28362125

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	2890376	Chr5	27063268
Translocation	Chr10	2890383	Chr5	27059590	2
Translocation	Chr2	3253481	Chr1	11737191
Translocation	Chr6	22827900	Chr5	15579833

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