Search Results
| Mutant Information |
|---|
| Mutant Name | FN3499-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3499-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 26
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 14954797 | G-A | Homo | ||
| SBS | Chr1 | 22243003 | C-T | HET | ||
| SBS | Chr2 | 6074949 | A-T | Homo | ||
| SBS | Chr2 | 34580198 | G-C | HET | ||
| SBS | Chr3 | 8416359 | A-G | HET | ||
| SBS | Chr3 | 9004988 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os03g16310 |
| SBS | Chr3 | 10041905 | G-T | HET | ||
| SBS | Chr3 | 21755617 | C-T | HET | ||
| SBS | Chr4 | 9667818 | C-T | HET | ||
| SBS | Chr4 | 21386815 | C-G | Homo | ||
| SBS | Chr4 | 26891556 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g45440 |
| SBS | Chr5 | 6568742 | G-C | HET | ||
| SBS | Chr5 | 21493063 | A-G | HET | ||
| SBS | Chr6 | 10425054 | G-T | HET | STOP_GAINED | LOC_Os06g17930 |
| SBS | Chr6 | 11968567 | G-A | HET | ||
| SBS | Chr6 | 24324859 | T-C | HET | ||
| SBS | Chr8 | 5249389 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os08g09020 |
| SBS | Chr8 | 18249104 | C-T | Homo | ||
| SBS | Chr9 | 13074142 | G-A | HET | ||
| SBS | Chr10 | 14189811 | A-T | HET | ||
| SBS | Chr11 | 1903429 | T-A | Homo | ||
| SBS | Chr11 | 3564956 | T-C | HET | ||
| SBS | Chr11 | 9674140 | G-A | HET | ||
| SBS | Chr11 | 15573338 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os11g27050 |
| SBS | Chr11 | 16307186 | T-A | HET | ||
| SBS | Chr12 | 17264478 | G-A | HET |
Deletions: 7
Insertions: 5
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr2 | 3392717 | 3392717 | 1 | |
| Insertion | Chr6 | 5543356 | 5543358 | 3 | |
| Insertion | Chr11 | 8178189 | 8178189 | 1 | LOC_Os11g14560 |
| Insertion | Chr10 | 7673651 | 7673651 | 1 | |
| Insertion | Chr10 | 10543218 | 10543283 | 66 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr4 | 18106256 | 18548948 | 2 |
Translocations: 10
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr5 | 1851293 | Chr4 | 1112498 | 2 |
| Translocation | Chr11 | 5734082 | Chr1 | 10234078 | |
| Translocation | Chr10 | 7831266 | Chr2 | 17726635 | 2 |
| Translocation | Chr9 | 8294683 | Chr2 | 16818162 | |
| Translocation | Chr11 | 13306791 | Chr4 | 31987972 | 2 |
| Translocation | Chr4 | 18106260 | Chr2 | 15962863 | 2 |
| Translocation | Chr8 | 23386247 | Chr7 | 24488804 | |
| Translocation | Chr11 | 24451275 | Chr3 | 12581340 | LOC_Os11g40870 |
| Translocation | Chr11 | 24621641 | Chr8 | 9667766 | 2 |
| Translocation | Chr11 | 29010103 | Chr3 | 31102232 |