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| Mutant Information |
|---|
| Mutant Name | FN3503-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3503-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 28
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 5465432 | C-T | HET | ||
| SBS | Chr11 | 14800675 | G-A | HET | ||
| SBS | Chr11 | 2245230 | C-T | Homo | ||
| SBS | Chr11 | 25316046 | C-G | HET | ||
| SBS | Chr12 | 19741952 | G-A | HET | ||
| SBS | Chr12 | 3265532 | C-T | HET | ||
| SBS | Chr2 | 14618703 | C-A | Homo | ||
| SBS | Chr2 | 18693039 | C-T | HET | ||
| SBS | Chr2 | 20665679 | G-A | HET | ||
| SBS | Chr3 | 10623965 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os03g18970 |
| SBS | Chr3 | 7922435 | T-A | HET | ||
| SBS | Chr4 | 13744020 | G-A | HET | STOP_GAINED | LOC_Os04g24060 |
| SBS | Chr4 | 16043864 | C-T | HET | ||
| SBS | Chr4 | 5762559 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os04g10610 |
| SBS | Chr4 | 9046265 | G-T | HET | ||
| SBS | Chr5 | 10199251 | C-A | HET | ||
| SBS | Chr5 | 10428264 | A-G | HET | ||
| SBS | Chr6 | 11298089 | G-A | HET | ||
| SBS | Chr7 | 1606203 | C-T | HET | ||
| SBS | Chr7 | 19020674 | T-C | Homo | ||
| SBS | Chr7 | 24370517 | C-T | Homo | ||
| SBS | Chr7 | 29477057 | A-G | Homo | ||
| SBS | Chr8 | 27426258 | G-T | Homo | ||
| SBS | Chr8 | 5911420 | A-G | HET | ||
| SBS | Chr9 | 20596358 | G-A | HET | ||
| SBS | Chr9 | 21165108 | T-A | HET | ||
| SBS | Chr9 | 22179165 | T-C | HET | ||
| SBS | Chr9 | 22204214 | A-G | HET |
Deletions: 6
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 2350001 | 2365000 | 14999 | 2 |
| Deletion | Chr1 | 5866001 | 6080000 | 213999 | 29 |
| Deletion | Chr3 | 11810001 | 11821000 | 10999 | 3 |
| Deletion | Chr4 | 19724764 | 19724765 | 1 | LOC_Os04g32720 |
| Deletion | Chr6 | 23047610 | 23047612 | 2 | LOC_Os06g38820 |
| Deletion | Chr1 | 38278001 | 38324000 | 45999 | 11 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr4 | 15273890 | 15273890 | 1 | |
| Insertion | Chr9 | 8823492 | 8823492 | 1 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr11 | 959677 | 963747 | |
| Inversion | Chr10 | 20554131 | 20800223 | LOC_Os10g38489 |
| Inversion | Chr10 | 20554152 | 20811716 | LOC_Os10g38489 |
Translocations: 12
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 429658 | Chr8 | 13845555 | |
| Translocation | Chr9 | 430602 | Chr8 | 13845553 | LOC_Os09g01610 |
| Translocation | Chr7 | 2747816 | Chr5 | 976788 | 2 |
| Translocation | Chr10 | 4623833 | Chr3 | 32491468 | |
| Translocation | Chr11 | 7158251 | Chr8 | 20379610 | |
| Translocation | Chr6 | 9190551 | Chr3 | 2887281 | 2 |
| Translocation | Chr6 | 10779888 | Chr3 | 25611052 | |
| Translocation | Chr11 | 13393192 | Chr4 | 9634836 | LOC_Os11g23234 |
| Translocation | Chr8 | 15010654 | Chr2 | 2451550 | 2 |
| Translocation | Chr10 | 18952757 | Chr8 | 9051134 | 2 |
| Translocation | Chr6 | 21361859 | Chr1 | 18784278 | |
| Translocation | Chr11 | 24440574 | Chr5 | 21302184 |