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Mutant Information

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20892452	T-C	HET
SBS	Chr10	20333481	C-T	HET
SBS	Chr11	15387837	G-A	Homo
SBS	Chr12	1909145	G-A	HET
SBS	Chr12	21551763	T-C	HET
SBS	Chr12	22272343	T-G	HET	STOP_GAINED	LOC_Os12g36380
SBS	Chr12	4496162	C-A	HET
SBS	Chr2	20888121	G-A	HET
SBS	Chr2	2201745	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g04790
SBS	Chr2	29919230	C-A	HET
SBS	Chr2	8255173	A-G	HET
SBS	Chr3	10251828	C-T	HET
SBS	Chr3	10366811	A-T	HET
SBS	Chr3	13406413	C-T	HET
SBS	Chr3	21653261	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g38970
SBS	Chr3	2294012	C-A	HET
SBS	Chr3	3268638	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g06510
SBS	Chr5	23949027	G-A	HET
SBS	Chr5	4672482	A-G	HET
SBS	Chr6	112388	G-A	HET
SBS	Chr6	5385871	G-C	HET
SBS	Chr7	10524798	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g17790
SBS	Chr7	10524799	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os07g17790
SBS	Chr7	8387901	G-T	HET
SBS	Chr8	19350608	G-A	HET
SBS	Chr8	25009067	A-G	Homo
SBS	Chr8	270772	C-T	HET
SBS	Chr8	6533021	T-C	Homo
SBS	Chr9	9179939	G-A	Homo

Deletions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	6592390	6592398	8
Deletion	Chr10	10690268	10690274	6	LOC_Os10g21080
Deletion	Chr8	11209419	11210414	995	LOC_Os08g18780
Deletion	Chr1	14730745	14730750	5	LOC_Os01g25990
Deletion	Chr7	22930813	22930814	1
Deletion	Chr6	24034677	24034684	7	LOC_Os06g40360
Deletion	Chr6	24119678	24119681	3	LOC_Os06g40480
Deletion	Chr7	24388627	24388641	14
Deletion	Chr5	28818821	28818830	9

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	6399086	6399086	1
Insertion	Chr11	14925446	14925446	1
Insertion	Chr8	17969694	17969742	49
Insertion	Chr9	2823796	2823796	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	4057488	4089228	2
Inversion	Chr12	4411035	4518699
Inversion	Chr12	4411918	4518726

Translocations: 10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	2364561	Chr3	25310490
Translocation	Chr7	2489231	Chr4	6509205	LOC_Os07g05420
Translocation	Chr7	2489235	Chr4	6506603	LOC_Os07g05420
Translocation	Chr9	6881544	Chr4	15380380
Translocation	Chr7	6895376	Chr1	28157002	LOC_Os07g12270
Translocation	Chr7	6895906	Chr1	28157011	LOC_Os07g12270
Translocation	Chr8	14737591	Chr7	5214181
Translocation	Chr9	16765231	Chr1	32057943	2
Translocation	Chr11	25851500	Chr6	16300080
Translocation	Chr3	30670734	Chr2	13966354	2

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