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Mutant Information |
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Mutant Name | FN3510-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN3510-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 40
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 8661627 | T-A | HET | ||
SBS | Chr1 | 21398681 | G-A | HET | ||
SBS | Chr1 | 36379336 | G-A | HET | ||
SBS | Chr2 | 7400880 | C-A | HET | ||
SBS | Chr2 | 17753197 | A-G | HET | ||
SBS | Chr2 | 24835023 | G-A | Homo | ||
SBS | Chr2 | 33565900 | G-C | HET | ||
SBS | Chr3 | 12886513 | G-T | HET | STOP_GAINED | LOC_Os03g22480 |
SBS | Chr3 | 17140429 | T-C | HET | ||
SBS | Chr3 | 18202910 | G-C | HET | ||
SBS | Chr3 | 23168744 | G-A | HET | ||
SBS | Chr3 | 25404930 | G-A | HET | ||
SBS | Chr4 | 8670143 | A-T | HET | ||
SBS | Chr4 | 10792584 | C-T | HET | ||
SBS | Chr4 | 11848579 | G-T | HET | ||
SBS | Chr4 | 13662766 | G-C | HET | ||
SBS | Chr4 | 24601642 | A-T | HET | ||
SBS | Chr4 | 24654252 | C-T | HET | ||
SBS | Chr5 | 8628326 | G-T | HET | ||
SBS | Chr5 | 10690697 | A-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os05g18490 |
SBS | Chr5 | 16772805 | T-A | HET | ||
SBS | Chr5 | 23134497 | C-T | HET | ||
SBS | Chr6 | 12534863 | A-G | HET | ||
SBS | Chr6 | 17863015 | G-A | HET | ||
SBS | Chr7 | 10638756 | T-A | Homo | ||
SBS | Chr7 | 18378972 | A-G | HET | ||
SBS | Chr7 | 18916916 | C-T | HET | ||
SBS | Chr7 | 18916917 | C-T | HET | ||
SBS | Chr7 | 18916918 | C-T | HET | ||
SBS | Chr7 | 19375826 | G-A | HET | ||
SBS | Chr7 | 25894074 | C-T | HET | ||
SBS | Chr8 | 9290990 | G-C | Homo | ||
SBS | Chr8 | 17501948 | C-T | HET | ||
SBS | Chr9 | 3195638 | A-T | HET | ||
SBS | Chr9 | 6162278 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os09g11110 |
SBS | Chr10 | 16829641 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os10g32030 |
SBS | Chr11 | 8453011 | G-A | HET | ||
SBS | Chr11 | 20286039 | A-C | HET | ||
SBS | Chr12 | 19509480 | G-T | Homo | ||
SBS | Chr12 | 24988289 | G-A | Homo |
Deletions: 19
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr6 | 2595858 | 2595874 | 16 | |
Deletion | Chr6 | 4001238 | 4001244 | 6 | |
Deletion | Chr7 | 5523817 | 5523824 | 7 | |
Deletion | Chr12 | 6768413 | 6768420 | 7 | |
Deletion | Chr2 | 8448001 | 8458000 | 9999 | 2 |
Deletion | Chr3 | 8832585 | 8832591 | 6 | LOC_Os03g16010 |
Deletion | Chr1 | 9185006 | 9185018 | 12 | |
Deletion | Chr12 | 13036374 | 13036394 | 20 | LOC_Os12g23060 |
Deletion | Chr10 | 15309349 | 15309357 | 8 | |
Deletion | Chr8 | 15541355 | 15541358 | 3 | |
Deletion | Chr1 | 16081001 | 16239000 | 157999 | 28 |
Deletion | Chr11 | 22046729 | 22046730 | 1 | LOC_Os11g37340 |
Deletion | Chr2 | 22336547 | 22336557 | 10 | |
Deletion | Chr11 | 22931782 | 22931859 | 77 | |
Deletion | Chr4 | 23527552 | 23527553 | 1 | LOC_Os04g39520 |
Deletion | Chr12 | 24498041 | 24498048 | 7 | |
Deletion | Chr6 | 25415469 | 25415484 | 15 | |
Deletion | Chr4 | 26254531 | 26254545 | 14 | |
Deletion | Chr7 | 28525097 | 28525102 | 5 |
Insertions: 4
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr6 | 5336125 | 5336126 | 2 | |
Insertion | Chr7 | 25653601 | 25653604 | 4 | |
Insertion | Chr1 | 5943189 | 5943206 | 18 | |
Insertion | Chr12 | 21982395 | 21982395 | 1 |
Inversions: 4
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr1 | 12812091 | 13670713 | 2 |
Inversion | Chr1 | 12812100 | 13670714 | 2 |
Inversion | Chr5 | 16496226 | 16690526 | 2 |
Inversion | Chr5 | 16496229 | 16690531 | 2 |
Translocations: 3
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr3 | 15104043 | Chr2 | 25382838 | 2 |
Translocation | Chr8 | 24878641 | Chr1 | 16080391 | |
Translocation | Chr8 | 24878669 | Chr1 | 16235170 |