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Mutant Information

Variant Information

Single base substitutions: 45

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10696927	C-T	HET
SBS	Chr1	18337293	A-C	Homo
SBS	Chr1	191940	G-C	Homo
SBS	Chr1	23277845	G-C	Homo
SBS	Chr1	38573953	A-G	HET
SBS	Chr1	7310299	A-G	HET
SBS	Chr10	20743550	G-A	HET
SBS	Chr10	2406213	G-T	HET
SBS	Chr10	3601587	G-T	HET
SBS	Chr10	7277012	G-T	Homo
SBS	Chr11	12876875	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os11g22430
SBS	Chr11	13182313	C-T	Homo
SBS	Chr11	19401258	C-T	HET
SBS	Chr11	6097175	G-A	Homo
SBS	Chr12	13714980	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g24110
SBS	Chr12	8112667	G-A	HET
SBS	Chr2	15211541	T-C	HET
SBS	Chr2	25222846	C-A	HET
SBS	Chr2	9268953	C-T	HET	STOP_GAINED	LOC_Os02g16290
SBS	Chr3	28547526	A-G	Homo
SBS	Chr3	31074403	G-A	Homo
SBS	Chr3	33745747	C-A	HET
SBS	Chr3	4495737	T-A	HET
SBS	Chr3	9634050	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g17300
SBS	Chr4	11432482	A-C	Homo
SBS	Chr4	22960340	G-A	HET
SBS	Chr4	6030433	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g11080
SBS	Chr5	10832188	C-T	HET
SBS	Chr5	11743402	T-A	HET
SBS	Chr5	779931	C-T	HET
SBS	Chr6	14036988	G-A	HET
SBS	Chr6	21488561	G-A	HET
SBS	Chr6	23833971	C-T	HET
SBS	Chr6	24180715	C-T	Homo
SBS	Chr7	15109261	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os07g26280
SBS	Chr7	28169912	G-A	Homo
SBS	Chr7	5489355	G-A	HET
SBS	Chr7	8592986	T-A	HET	STOP_GAINED	LOC_Os07g14980
SBS	Chr7	8592987	A-T	HET
SBS	Chr8	14385480	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g23770
SBS	Chr8	16114190	T-C	HET
SBS	Chr8	7516616	T-C	HET
SBS	Chr9	12289512	G-A	HET
SBS	Chr9	22594118	G-A	Homo
SBS	Chr9	6002510	C-T	HET

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	293270	293277	7	LOC_Os01g01580
Deletion	Chr4	1224634	1224640	6
Deletion	Chr9	2334785	2334787	2	LOC_Os09g04410
Deletion	Chr6	7673893	7673907	14
Deletion	Chr5	9723239	9723241	2
Deletion	Chr12	10383813	10383814	1	LOC_Os12g18060
Deletion	Chr1	11488869	11489376	507	LOC_Os01g20200
Deletion	Chr5	12047001	12061000	13999	3
Deletion	Chr5	12065001	12097000	31999	6
Deletion	Chr3	13362876	13362877	1	LOC_Os03g23110
Deletion	Chr3	15988326	15988336	10
Deletion	Chr1	16285491	16285495	4	LOC_Os01g29090
Deletion	Chr12	22306234	22306240	6

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	11590335	11590338	4
Insertion	Chr6	11827213	11827213	1
Insertion	Chr7	24289012	24289013	2
Insertion	Chr7	2973530	2973530	1
Insertion	Chr7	8338880	8338881	2

Inversions: 9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	4239704	4246328	2
Inversion	Chr7	4239852	4246352	2
Inversion	Chr7	4290461	5083422	2
Inversion	Chr7	4290473	5083426	2
Inversion	Chr5	9266570	9527793	LOC_Os05g16360
Inversion	Chr5	9530904	9717904	2
Inversion	Chr5	9730419	10068599	2
Inversion	Chr10	14533681	15370720	2
Inversion	Chr7	18889321	18889494

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	8345717	Chr4	6997594	2
Translocation	Chr7	14195060	Chr4	13542770
Translocation	Chr12	14623734	Chr5	12285016
Translocation	Chr4	17297872	Chr3	27525973	2
Translocation	Chr12	23184076	Chr8	4009896	LOC_Os12g37760

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