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Mutant Information

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21623612	A-T	HET
SBS	Chr1	28962461	C-T	HET
SBS	Chr1	32726310	A-C	HET
SBS	Chr1	39401242	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g67790
SBS	Chr10	6270802	G-A	HET
SBS	Chr10	8377240	C-G	Homo
SBS	Chr12	1487417	A-G	Homo
SBS	Chr12	17626911	G-C	HET
SBS	Chr12	5351555	C-T	Homo
SBS	Chr2	15764522	G-A	HET
SBS	Chr2	7279088	G-A	Homo
SBS	Chr2	7279089	G-A	Homo
SBS	Chr3	14080547	C-A	HET
SBS	Chr3	28984926	A-G	Homo
SBS	Chr3	29965783	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g52190
SBS	Chr4	16072257	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g27200
SBS	Chr4	19066644	G-A	HET
SBS	Chr5	13901307	G-A	HET
SBS	Chr5	18087572	C-G	HET
SBS	Chr5	20034902	G-A	HET
SBS	Chr5	9824846	C-T	HET	STOP_GAINED	LOC_Os05g17150
SBS	Chr6	18011958	T-A	HET
SBS	Chr6	7488062	C-A	HET
SBS	Chr7	1054532	C-T	Homo
SBS	Chr7	26377429	T-A	HET
SBS	Chr7	7496246	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g13080
SBS	Chr8	21987727	C-T	Homo
SBS	Chr8	25435071	G-A	Homo
SBS	Chr9	18881054	G-A	HET

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	1495645	1495655	10
Deletion	Chr6	2822811	2822812	1
Deletion	Chr6	6671542	6671543	1
Deletion	Chr7	9538051	9538054	3
Deletion	Chr10	9660742	9660746	4
Deletion	Chr11	12828951	12828952	1
Deletion	Chr5	13619001	13698000	78999	10
Deletion	Chr6	15430331	15430332	1
Deletion	Chr8	20352198	20352201	3	LOC_Os08g32840
Deletion	Chr3	20810676	20810677	1	LOC_Os03g37500
Deletion	Chr8	21922302	21922305	3
Deletion	Chr4	22584001	22592000	7999	LOC_Os04g37960
Deletion	Chr4	27243840	27243849	9
Deletion	Chr4	28123861	28123862	1
Deletion	Chr4	30900001	30919000	18999	4
Deletion	Chr4	35272157	35272170	13
Deletion	Chr1	39273329	39273331	2

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	3574739	3574739	1
Insertion	Chr4	12153925	12153925	1
Insertion	Chr9	17689969	17689971	3
Insertion	Chr9	6413384	6413386	3
Insertion	Chr9	7153260	7153260	1

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	12794955	13166787	2
Inversion	Chr6	13170901	13669762	2
Inversion	Chr10	21045148	21474946	2
Inversion	Chr3	29453825	30143141	2
Inversion	Chr4	30623384	30899511	2
Inversion	Chr4	30623390	30919261	2

Translocations: 21

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	1174414	Chr6	12798215	2
Translocation	Chr10	1174430	Chr6	12794966	2
Translocation	Chr12	5460989	Chr3	32963678	2
Translocation	Chr5	6652331	Chr4	1448385	2
Translocation	Chr8	7300632	Chr6	22107489	2
Translocation	Chr10	8053110	Chr7	15100151	LOC_Os10g15210
Translocation	Chr8	10108511	Chr6	18098131	LOC_Os08g16490
Translocation	Chr9	10172095	Chr5	22161738	2
Translocation	Chr9	10172780	Chr5	22161723	2
Translocation	Chr8	10395237	Chr1	31269133
Translocation	Chr10	12733177	Chr4	504406	2
Translocation	Chr6	13169702	Chr2	26904831	LOC_Os06g22650
Translocation	Chr4	16444772	Chr1	1518196	LOC_Os04g27830
Translocation	Chr12	16452530	Chr5	13458474
Translocation	Chr11	17701376	Chr8	24046280
Translocation	Chr7	19449346	Chr1	12114911
Translocation	Chr10	20724358	Chr6	13170897	2
Translocation	Chr10	21045132	Chr2	26904737
Translocation	Chr6	21200642	Chr5	12284704
Translocation	Chr12	27006124	Chr2	10461208
Translocation	Chr11	27371893	Chr6	22347093	2

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