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Mutant Information

Mutant NameFN3532-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN3532-S Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
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Variant Information

Single base substitutions: 31
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr110355332A-THomo
SBSChr110355340C-THomo
SBSChr115246826G-THETNON_SYNONYMOUS_CODINGLOC_Os01g27320
SBSChr115676516C-AHomo
SBSChr140262749G-AHomo
SBSChr1215717575G-AHET
SBSChr129575354A-THET
SBSChr223862770A-THomoNON_SYNONYMOUS_CODINGLOC_Os02g39540
SBSChr22647082C-THomo
SBSChr311957752T-CHET
SBSChr312042471C-AHET
SBSChr415255276A-CHomo
SBSChr415255278T-AHomo
SBSChr415255284G-THET
SBSChr515370221C-THET
SBSChr517774816A-GHET
SBSChr518412500C-THET
SBSChr626960327G-CHET
SBSChr6381220C-AHET
SBSChr723689484C-THET
SBSChr7386793A-CHET
SBSChr7386795T-AHET
SBSChr815805815C-GHET
SBSChr816743782G-AHET
SBSChr83790537A-THET
SBSChr88686817C-THET
SBSChr88686820T-GHET
SBSChr89003996G-AHETNON_SYNONYMOUS_CODINGLOC_Os08g14940
SBSChr91100572T-AHET
SBSChr913372874G-AHET
SBSChr914898345C-THomo

Deletions: 16
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr217272117273716
DeletionChr96060956060972LOC_Os09g01900
DeletionChr9123590912359112
DeletionChr10207060920706101
DeletionChr89022097902212528
DeletionChr69590463959048724LOC_Os06g16660
DeletionChr121109600111123000269994
DeletionChr611612322116123242
DeletionChr219283769192837756
DeletionChr11199285771992860629
DeletionChr2210569322105694513LOC_Os02g35080
DeletionChr5214730012148300099994
DeletionChr1122265957222659603LOC_Os11g37680
DeletionChr11232754622327547816
DeletionChr427157763271577718LOC_Os04g45860
DeletionChr14319900143271000719999

Insertions: 5
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr11256441152564418672
InsertionChr1226316418263164192
InsertionChr125511207551122014
InsertionChr720899762208997654
InsertionChr8241902182419024831

Inversions: 1
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr119998921000233

Translocations: 5
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr3261831Chr1432041902
TranslocationChr3261832Chr1432041992
TranslocationChr122071890Chr5113515212
TranslocationChr522283813Chr213372101LOC_Os05g37980
TranslocationChr522283814Chr213372156LOC_Os05g37980