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Mutant Information |
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Mutant Name | FN3532-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN3532-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
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Single base substitutions: 31
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 10355332 | A-T | Homo | ||
SBS | Chr1 | 10355340 | C-T | Homo | ||
SBS | Chr1 | 15246826 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g27320 |
SBS | Chr1 | 15676516 | C-A | Homo | ||
SBS | Chr1 | 40262749 | G-A | Homo | ||
SBS | Chr12 | 15717575 | G-A | HET | ||
SBS | Chr12 | 9575354 | A-T | HET | ||
SBS | Chr2 | 23862770 | A-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os02g39540 |
SBS | Chr2 | 2647082 | C-T | Homo | ||
SBS | Chr3 | 11957752 | T-C | HET | ||
SBS | Chr3 | 12042471 | C-A | HET | ||
SBS | Chr4 | 15255276 | A-C | Homo | ||
SBS | Chr4 | 15255278 | T-A | Homo | ||
SBS | Chr4 | 15255284 | G-T | HET | ||
SBS | Chr5 | 15370221 | C-T | HET | ||
SBS | Chr5 | 17774816 | A-G | HET | ||
SBS | Chr5 | 18412500 | C-T | HET | ||
SBS | Chr6 | 26960327 | G-C | HET | ||
SBS | Chr6 | 381220 | C-A | HET | ||
SBS | Chr7 | 23689484 | C-T | HET | ||
SBS | Chr7 | 386793 | A-C | HET | ||
SBS | Chr7 | 386795 | T-A | HET | ||
SBS | Chr8 | 15805815 | C-G | HET | ||
SBS | Chr8 | 16743782 | G-A | HET | ||
SBS | Chr8 | 3790537 | A-T | HET | ||
SBS | Chr8 | 8686817 | C-T | HET | ||
SBS | Chr8 | 8686820 | T-G | HET | ||
SBS | Chr8 | 9003996 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os08g14940 |
SBS | Chr9 | 1100572 | T-A | HET | ||
SBS | Chr9 | 13372874 | G-A | HET | ||
SBS | Chr9 | 14898345 | C-T | Homo |
Deletions: 16
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr2 | 172721 | 172737 | 16 | |
Deletion | Chr9 | 606095 | 606097 | 2 | LOC_Os09g01900 |
Deletion | Chr9 | 1235909 | 1235911 | 2 | |
Deletion | Chr10 | 2070609 | 2070610 | 1 | |
Deletion | Chr8 | 9022097 | 9022125 | 28 | |
Deletion | Chr6 | 9590463 | 9590487 | 24 | LOC_Os06g16660 |
Deletion | Chr12 | 11096001 | 11123000 | 26999 | 4 |
Deletion | Chr6 | 11612322 | 11612324 | 2 | |
Deletion | Chr2 | 19283769 | 19283775 | 6 | |
Deletion | Chr11 | 19928577 | 19928606 | 29 | |
Deletion | Chr2 | 21056932 | 21056945 | 13 | LOC_Os02g35080 |
Deletion | Chr5 | 21473001 | 21483000 | 9999 | 4 |
Deletion | Chr11 | 22265957 | 22265960 | 3 | LOC_Os11g37680 |
Deletion | Chr11 | 23275462 | 23275478 | 16 | |
Deletion | Chr4 | 27157763 | 27157771 | 8 | LOC_Os04g45860 |
Deletion | Chr1 | 43199001 | 43271000 | 71999 | 9 |
Insertions: 5
Inversions: 1
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr11 | 999892 | 1000233 |
Translocations: 5
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr3 | 261831 | Chr1 | 43204190 | 2 |
Translocation | Chr3 | 261832 | Chr1 | 43204199 | 2 |
Translocation | Chr12 | 2071890 | Chr5 | 11351521 | 2 |
Translocation | Chr5 | 22283813 | Chr2 | 13372101 | LOC_Os05g37980 |
Translocation | Chr5 | 22283814 | Chr2 | 13372156 | LOC_Os05g37980 |