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| Mutant Information |
|---|
| Mutant Name | FN3538-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3538-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 33
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 18236942 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g33120 |
| SBS | Chr1 | 35581232 | G-A | HET | ||
| SBS | Chr1 | 37122457 | G-T | HET | ||
| SBS | Chr1 | 43259507 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g74680 |
| SBS | Chr11 | 15422684 | T-G | HET | NON_SYNONYMOUS_CODING | LOC_Os11g26850 |
| SBS | Chr11 | 15567450 | G-T | HET | ||
| SBS | Chr11 | 20973329 | T-G | HET | ||
| SBS | Chr11 | 23306909 | A-T | HET | ||
| SBS | Chr11 | 24214864 | G-A | HET | ||
| SBS | Chr11 | 7888509 | C-T | Homo | ||
| SBS | Chr11 | 7888510 | A-G | Homo | ||
| SBS | Chr12 | 17502484 | A-C | HET | ||
| SBS | Chr12 | 22721221 | G-A | HET | ||
| SBS | Chr12 | 3225262 | A-G | HET | ||
| SBS | Chr2 | 11287329 | T-A | HET | ||
| SBS | Chr2 | 20634921 | G-A | HET | ||
| SBS | Chr2 | 31719340 | A-T | HET | ||
| SBS | Chr2 | 33873475 | C-T | HET | ||
| SBS | Chr2 | 33873476 | A-T | HET | ||
| SBS | Chr2 | 33873477 | A-T | HET | ||
| SBS | Chr3 | 35145055 | G-A | HET | ||
| SBS | Chr4 | 12763336 | A-G | Homo | ||
| SBS | Chr4 | 14516330 | A-T | HET | ||
| SBS | Chr4 | 1453397 | G-A | HET | ||
| SBS | Chr4 | 14867904 | G-A | Homo | ||
| SBS | Chr5 | 17817799 | G-C | HET | ||
| SBS | Chr5 | 9224093 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os05g16290 |
| SBS | Chr6 | 14439835 | A-T | HET | ||
| SBS | Chr6 | 15905416 | G-T | HET | ||
| SBS | Chr6 | 16239120 | T-C | HET | ||
| SBS | Chr6 | 16329316 | G-A | HET | ||
| SBS | Chr6 | 4128407 | G-T | HET | ||
| SBS | Chr8 | 5886995 | C-T | Homo |
Deletions: 19
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr1 | 3380185 | 3380186 | 1 | |
| Deletion | Chr11 | 4045462 | 4045476 | 14 | |
| Deletion | Chr6 | 7725528 | 7725550 | 22 | |
| Deletion | Chr5 | 8132922 | 8132923 | 1 | |
| Deletion | Chr12 | 8797140 | 8797142 | 2 | |
| Deletion | Chr7 | 12229807 | 12229808 | 1 | |
| Deletion | Chr2 | 13668057 | 13668210 | 153 | |
| Deletion | Chr6 | 14940001 | 15039000 | 98999 | 21 |
| Deletion | Chr1 | 15306803 | 15306804 | 1 | |
| Deletion | Chr2 | 15658317 | 15658318 | 1 | |
| Deletion | Chr8 | 17868834 | 17868836 | 2 | |
| Deletion | Chr5 | 19381816 | 19381817 | 1 | |
| Deletion | Chr2 | 21079701 | 21079702 | 1 | |
| Deletion | Chr10 | 21992545 | 21992546 | 1 | LOC_Os10g40934 |
| Deletion | Chr4 | 22770971 | 22770978 | 7 | |
| Deletion | Chr8 | 23499462 | 23499468 | 6 | |
| Deletion | Chr7 | 28925081 | 28925089 | 8 | |
| Deletion | Chr4 | 28947072 | 28948009 | 937 | |
| Deletion | Chr1 | 35974932 | 35974935 | 3 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 12849436 | 12849437 | 2 | |
| Insertion | Chr12 | 17878258 | 17878258 | 1 | |
| Insertion | Chr5 | 5207897 | 5207898 | 2 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr7 | 20413184 | 20631697 | LOC_Os07g34130 |
| Inversion | Chr12 | 25393152 | 25487005 | LOC_Os12g41040 |
| Inversion | Chr4 | 32084501 | 32209711 | 2 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 7229983 | Chr3 | 32905402 | |
| Translocation | Chr9 | 16923207 | Chr4 | 13705017 | LOC_Os09g27810 |
| Translocation | Chr12 | 19447633 | Chr1 | 23373052 | |
| Translocation | Chr3 | 23350219 | Chr2 | 25750918 |