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Mutant Information

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	313757	C-T	HET
SBS	Chr1	14652280	T-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g25839
SBS	Chr1	17894348	T-C	Homo
SBS	Chr1	20451151	G-C	Homo
SBS	Chr2	14890120	C-T	Homo
SBS	Chr2	25068168	T-G	HET
SBS	Chr3	5999250	T-A	HET
SBS	Chr3	13898051	C-T	HET
SBS	Chr3	23285144	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g41920
SBS	Chr3	31972004	G-T	HET
SBS	Chr4	26887272	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g45440
SBS	Chr5	8129612	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g14420
SBS	Chr5	25731407	C-T	Homo
SBS	Chr5	28489189	T-A	HET
SBS	Chr6	3751694	T-A	HET
SBS	Chr6	3751695	G-A	HET
SBS	Chr6	15005547	C-T	Homo
SBS	Chr6	17296289	T-A	Homo
SBS	Chr6	28769077	T-C	HET
SBS	Chr7	1812890	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os07g04190
SBS	Chr7	27255463	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g45650
SBS	Chr8	6393009	C-T	HET
SBS	Chr8	19513012	G-T	Homo
SBS	Chr8	19513013	C-T	Homo
SBS	Chr10	3216749	C-T	HET
SBS	Chr11	12994104	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g22580
SBS	Chr11	20195144	G-A	Homo
SBS	Chr12	10803927	T-A	HET

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	86063	86066	3
Deletion	Chr12	657398	657407	9
Deletion	Chr11	6475659	6475667	8
Deletion	Chr12	11898597	11898598	1
Deletion	Chr9	13641628	13641635	7
Deletion	Chr6	14023792	14023799	7
Deletion	Chr7	14390183	14390185	2
Deletion	Chr2	14886328	14886338	10	LOC_Os02g25490
Deletion	Chr11	16155475	16155491	16
Deletion	Chr3	24947817	24947821	4
Deletion	Chr4	26998001	27309000	310999	41
Deletion	Chr2	29995292	29995293	1
Deletion	Chr1	35803612	35803625	13

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	2725572	2725572	1
Insertion	Chr5	2429594	2429594	1	LOC_Os05g05000
Insertion	Chr11	22130893	22130922	30

No Inversion

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	11649636	Chr4	18885957

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