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| Mutant Information |
|---|
| Mutant Name | FN3542-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3542-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 25
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 9965131 | A-T | HET | ||
| SBS | Chr11 | 13388055 | C-T | HET | ||
| SBS | Chr12 | 14196377 | T-C | HET | ||
| SBS | Chr2 | 35101604 | A-C | Homo | ||
| SBS | Chr2 | 35154304 | T-C | Homo | ||
| SBS | Chr2 | 6346038 | C-A | Homo | ||
| SBS | Chr2 | 6346039 | C-A | Homo | ||
| SBS | Chr2 | 6415872 | A-T | Homo | ||
| SBS | Chr2 | 6415873 | C-T | Homo | ||
| SBS | Chr3 | 22195886 | G-A | HET | ||
| SBS | Chr3 | 23006070 | T-C | HET | ||
| SBS | Chr4 | 11200415 | C-T | HET | ||
| SBS | Chr4 | 25227863 | C-T | HET | ||
| SBS | Chr4 | 5642611 | T-A | Homo | ||
| SBS | Chr5 | 3045286 | T-C | HET | ||
| SBS | Chr5 | 4594945 | C-T | HET | ||
| SBS | Chr5 | 7552571 | A-G | HET | ||
| SBS | Chr6 | 23447455 | T-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os06g39480 |
| SBS | Chr6 | 5868075 | G-A | Homo | ||
| SBS | Chr6 | 9172724 | T-C | Homo | ||
| SBS | Chr8 | 18661180 | T-C | Homo | ||
| SBS | Chr8 | 20398983 | G-A | HET | ||
| SBS | Chr8 | 2795062 | T-A | HET | ||
| SBS | Chr8 | 7261310 | C-A | HET | ||
| SBS | Chr9 | 10796996 | C-T | HET |
Deletions: 15
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 2543637 | 2543646 | 9 | |
| Deletion | Chr10 | 3424001 | 3564000 | 139999 | 22 |
| Deletion | Chr11 | 4403635 | 4403640 | 5 | |
| Deletion | Chr10 | 4617001 | 4851000 | 233999 | 43 |
| Deletion | Chr10 | 5027001 | 5094000 | 66999 | 15 |
| Deletion | Chr10 | 5135001 | 5289000 | 153999 | 23 |
| Deletion | Chr1 | 6397592 | 6397593 | 1 | |
| Deletion | Chr4 | 7243001 | 7451000 | 207999 | 25 |
| Deletion | Chr1 | 11317001 | 11353000 | 35999 | 4 |
| Deletion | Chr10 | 15244173 | 15244174 | 1 | |
| Deletion | Chr4 | 20301789 | 20301790 | 1 | |
| Deletion | Chr11 | 23797110 | 23797113 | 3 | |
| Deletion | Chr6 | 24892635 | 24892649 | 14 | |
| Deletion | Chr1 | 26987284 | 26987286 | 2 | |
| Deletion | Chr4 | 30570864 | 30570868 | 4 | LOC_Os04g51600 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 22733859 | 22733908 | 50 | |
| Insertion | Chr4 | 703349 | 703360 | 12 | |
| Insertion | Chr6 | 16047129 | 16047197 | 69 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr1 | 11317978 | 11734439 | LOC_Os01g19940 |
| Inversion | Chr1 | 11352896 | 11734442 | LOC_Os01g19970 |
| Inversion | Chr11 | 27705538 | 27795818 | 2 |
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 3428468 | Chr9 | 10912591 | LOC_Os11g06934 |
| Translocation | Chr6 | 7521744 | Chr3 | 25342952 | 2 |
| Translocation | Chr10 | 12580401 | Chr8 | 14922478 | |
| Translocation | Chr11 | 26285179 | Chr2 | 10494306 | 2 |
| Translocation | Chr4 | 29635199 | Chr1 | 38797770 |