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| Mutant Information |
|---|
| Mutant Name | FN3552-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3552-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 32
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 16036073 | A-T | Homo | ||
| SBS | Chr1 | 39616305 | G-T | Homo | ||
| SBS | Chr10 | 16970847 | G-A | Homo | ||
| SBS | Chr11 | 10438391 | G-T | Homo | ||
| SBS | Chr11 | 13193757 | C-A | Homo | STOP_GAINED | LOC_Os11g22950 |
| SBS | Chr11 | 13193758 | T-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os11g22950 |
| SBS | Chr11 | 13365102 | T-C | Homo | ||
| SBS | Chr11 | 27079163 | T-C | HET | ||
| SBS | Chr11 | 5135399 | C-T | Homo | ||
| SBS | Chr12 | 11468824 | T-G | Homo | ||
| SBS | Chr12 | 21289054 | C-G | HET | ||
| SBS | Chr12 | 22896614 | A-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os12g37300 |
| SBS | Chr2 | 29589289 | G-A | HET | ||
| SBS | Chr4 | 20155780 | T-G | HET | ||
| SBS | Chr4 | 26353955 | T-C | Homo | ||
| SBS | Chr4 | 29304968 | T-C | HET | ||
| SBS | Chr4 | 3116779 | C-T | Homo | STOP_GAINED | LOC_Os04g06010 |
| SBS | Chr4 | 32466277 | A-C | HET | ||
| SBS | Chr4 | 804283 | C-A | HET | ||
| SBS | Chr4 | 804284 | G-A | HET | ||
| SBS | Chr4 | 9937422 | C-A | HET | ||
| SBS | Chr5 | 19310522 | A-T | HET | ||
| SBS | Chr5 | 26441617 | G-A | HET | ||
| SBS | Chr5 | 4133043 | T-C | HET | ||
| SBS | Chr5 | 4133048 | C-A | HET | ||
| SBS | Chr6 | 6968587 | G-A | Homo | ||
| SBS | Chr6 | 8181927 | C-T | Homo | ||
| SBS | Chr6 | 9522558 | A-T | HET | STOP_GAINED | LOC_Os06g16580 |
| SBS | Chr7 | 6711645 | G-C | HET | ||
| SBS | Chr8 | 1334234 | G-A | HET | ||
| SBS | Chr8 | 23667308 | A-T | HET | ||
| SBS | Chr9 | 22138025 | G-A | Homo |
Deletions: 18
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 3381403 | 3381414 | 11 | |
| Deletion | Chr8 | 4229675 | 4229683 | 8 | |
| Deletion | Chr10 | 5459001 | 5489000 | 29999 | 4 |
| Deletion | Chr10 | 7799732 | 7799738 | 6 | |
| Deletion | Chr4 | 8143895 | 8143916 | 21 | |
| Deletion | Chr11 | 8323001 | 8359000 | 35999 | 6 |
| Deletion | Chr8 | 11631622 | 11631623 | 1 | |
| Deletion | Chr8 | 12067455 | 12067465 | 10 | |
| Deletion | Chr3 | 14000926 | 14000927 | 1 | LOC_Os03g24580 |
| Deletion | Chr6 | 14215155 | 14215156 | 1 | |
| Deletion | Chr6 | 15410526 | 15410534 | 8 | |
| Deletion | Chr12 | 16671151 | 16671161 | 10 | LOC_Os12g28220 |
| Deletion | Chr11 | 23218875 | 23218887 | 12 | |
| Deletion | Chr6 | 25586820 | 25586873 | 53 | |
| Deletion | Chr5 | 29712001 | 29734000 | 21999 | 2 |
| Deletion | Chr1 | 30105243 | 30105244 | 1 | |
| Deletion | Chr2 | 31256001 | 31345000 | 88999 | 14 |
| Deletion | Chr1 | 39616818 | 39616823 | 5 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 21228561 | 21228561 | 1 | |
| Insertion | Chr11 | 9386839 | 9386839 | 1 | LOC_Os11g16920 |
| Insertion | Chr12 | 22863412 | 22863417 | 6 | |
| Insertion | Chr6 | 31180023 | 31180082 | 60 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr5 | 18324072 | 18324189 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 4907894 | Chr4 | 7638606 | 2 |
| Translocation | Chr9 | 9574141 | Chr1 | 6538683 | |
| Translocation | Chr7 | 12408461 | Chr1 | 27404387 | |
| Translocation | Chr11 | 19931472 | Chr4 | 16892855 | |
| Translocation | Chr10 | 21241007 | Chr9 | 3932576 | |
| Translocation | Chr11 | 28408021 | Chr6 | 1078299 | 2 |