Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN3554-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3554-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 33
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 25393231 | C-A | HET | ||
| SBS | Chr10 | 11805623 | T-C | HET | ||
| SBS | Chr10 | 17700705 | T-C | HET | ||
| SBS | Chr11 | 13631253 | G-A | Homo | ||
| SBS | Chr11 | 21412844 | T-A | HET | ||
| SBS | Chr12 | 12075798 | G-A | HET | ||
| SBS | Chr12 | 4229610 | T-A | Homo | ||
| SBS | Chr2 | 12905459 | A-G | HET | ||
| SBS | Chr2 | 27513553 | G-A | HET | ||
| SBS | Chr2 | 27752804 | C-T | HET | ||
| SBS | Chr3 | 15524635 | C-T | Homo | ||
| SBS | Chr3 | 22683600 | C-A | Homo | ||
| SBS | Chr3 | 24973032 | C-T | HET | STOP_GAINED | LOC_Os03g44390 |
| SBS | Chr3 | 2665817 | T-C | HET | ||
| SBS | Chr3 | 30157618 | C-T | Homo | ||
| SBS | Chr3 | 31349209 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os03g55100 |
| SBS | Chr3 | 7129959 | C-T | Homo | ||
| SBS | Chr4 | 14567068 | C-G | HET | ||
| SBS | Chr4 | 1474122 | C-T | HET | ||
| SBS | Chr4 | 1545009 | T-A | HET | ||
| SBS | Chr4 | 679086 | A-C | HET | ||
| SBS | Chr4 | 9212804 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os04g16810 |
| SBS | Chr5 | 10467515 | C-T | Homo | ||
| SBS | Chr5 | 10974093 | C-T | Homo | ||
| SBS | Chr5 | 1965199 | A-G | Homo | ||
| SBS | Chr5 | 6504540 | C-T | Homo | ||
| SBS | Chr6 | 7098928 | T-C | Homo | ||
| SBS | Chr7 | 12403177 | C-T | Homo | ||
| SBS | Chr8 | 18483821 | C-A | HET | ||
| SBS | Chr8 | 24826593 | A-T | Homo | ||
| SBS | Chr8 | 4252693 | T-A | HET | ||
| SBS | Chr9 | 2084917 | G-C | Homo | ||
| SBS | Chr9 | 3997712 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os09g07860 |
Deletions: 12
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 5564247 | 5564252 | 5 | LOC_Os09g10220 |
| Deletion | Chr9 | 5897728 | 5897732 | 4 | |
| Deletion | Chr3 | 10030351 | 10030368 | 17 | |
| Deletion | Chr3 | 15098101 | 15098103 | 2 | |
| Deletion | Chr1 | 15840058 | 15840059 | 1 | |
| Deletion | Chr2 | 18758570 | 18758571 | 1 | |
| Deletion | Chr11 | 21456023 | 21456037 | 14 | |
| Deletion | Chr11 | 21702208 | 21702216 | 8 | |
| Deletion | Chr10 | 23089442 | 23089446 | 4 | LOC_Os10g42820 |
| Deletion | Chr11 | 24012797 | 24012800 | 3 | |
| Deletion | Chr2 | 29098736 | 29098742 | 6 | |
| Deletion | Chr2 | 29128653 | 29128654 | 1 |
Insertions: 9
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 4780094 | 4780096 | 3 | LOC_Os10g08830 |
| Insertion | Chr11 | 18798651 | 18798652 | 2 | LOC_Os11g31970 |
| Insertion | Chr12 | 15228442 | 15228455 | 14 | LOC_Os12g26140 |
| Insertion | Chr4 | 12901740 | 12901782 | 43 | |
| Insertion | Chr4 | 27471956 | 27471958 | 3 | |
| Insertion | Chr5 | 14520416 | 14520417 | 2 | |
| Insertion | Chr6 | 16630623 | 16630623 | 1 | LOC_Os06g29140 |
| Insertion | Chr6 | 5718480 | 5718481 | 2 | |
| Insertion | Chr9 | 5829123 | 5829123 | 1 |
No Inversion
Translocations: 11
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr6 | 4793171 | Chr5 | 4127582 | |
| Translocation | Chr5 | 5022236 | Chr2 | 25341897 | 2 |
| Translocation | Chr5 | 14097366 | Chr3 | 23173849 | 2 |
| Translocation | Chr11 | 15785786 | Chr7 | 9520285 | |
| Translocation | Chr11 | 18164434 | Chr10 | 19652802 | |
| Translocation | Chr6 | 25979515 | Chr5 | 4126861 | LOC_Os06g43220 |
| Translocation | Chr6 | 25981887 | Chr5 | 4126861 | |
| Translocation | Chr6 | 25981897 | Chr1 | 3002916 | |
| Translocation | Chr6 | 25982425 | Chr1 | 3002913 | |
| Translocation | Chr6 | 25982503 | Chr1 | 3001300 | |
| Translocation | Chr11 | 27266944 | Chr5 | 16159513 | 2 |