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| Mutant Information |
|---|
| Mutant Name | FN3555-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3555-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 30
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 31467218 | C-T | HET | ||
| SBS | Chr10 | 2500273 | G-A | HET | ||
| SBS | Chr10 | 3877374 | T-A | HET | ||
| SBS | Chr10 | 7133929 | G-A | HET | ||
| SBS | Chr10 | 9293701 | G-C | HET | ||
| SBS | Chr11 | 20677631 | T-G | HET | ||
| SBS | Chr11 | 21101144 | C-T | HET | ||
| SBS | Chr11 | 26113599 | A-T | Homo | ||
| SBS | Chr11 | 3160972 | T-A | Homo | ||
| SBS | Chr11 | 9785251 | G-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os11g17570 |
| SBS | Chr2 | 11167251 | T-A | HET | ||
| SBS | Chr2 | 15438294 | A-C | Homo | ||
| SBS | Chr2 | 24780058 | G-C | HET | ||
| SBS | Chr2 | 3847445 | T-C | Homo | ||
| SBS | Chr3 | 10645047 | T-A | Homo | ||
| SBS | Chr4 | 258681 | C-T | HET | ||
| SBS | Chr4 | 3083424 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g05950 |
| SBS | Chr5 | 1582214 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g03650 |
| SBS | Chr5 | 22560122 | T-C | Homo | ||
| SBS | Chr5 | 2494267 | C-A | Homo | ||
| SBS | Chr6 | 19877534 | G-A | Homo | ||
| SBS | Chr6 | 29494900 | C-G | HET | ||
| SBS | Chr7 | 11092250 | C-T | HET | ||
| SBS | Chr7 | 11598160 | T-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os07g19570 |
| SBS | Chr7 | 25953488 | A-G | HET | ||
| SBS | Chr8 | 9191549 | C-T | Homo | ||
| SBS | Chr9 | 1179858 | C-G | HET | ||
| SBS | Chr9 | 18384009 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os09g30200 |
| SBS | Chr9 | 19875789 | C-T | HET | ||
| SBS | Chr9 | 2473277 | C-T | HET |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr3 | 3247750 | 3247755 | 5 | |
| Deletion | Chr5 | 5603717 | 5603718 | 1 | LOC_Os05g10270 |
| Deletion | Chr7 | 5698208 | 5698216 | 8 | |
| Deletion | Chr9 | 7747075 | 7747076 | 1 | |
| Deletion | Chr2 | 11700001 | 11897000 | 196999 | 28 |
| Deletion | Chr4 | 12756645 | 12756648 | 3 | |
| Deletion | Chr9 | 13245001 | 13355000 | 109999 | 20 |
| Deletion | Chr12 | 17332918 | 17332921 | 3 | |
| Deletion | Chr8 | 19054327 | 19054333 | 6 | |
| Deletion | Chr4 | 24390688 | 24390689 | 1 | LOC_Os04g41120 |
| Deletion | Chr3 | 27046998 | 27047000 | 2 | LOC_Os03g47720 |
| Deletion | Chr8 | 28404342 | 28404343 | 1 | |
| Deletion | Chr1 | 36840827 | 36840829 | 2 | LOC_Os01g63540 |
| Deletion | Chr1 | 39189657 | 39189660 | 3 |
No Insertion
Inversions: 5
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr8 | 583409 | 662343 | 2 |
| Inversion | Chr8 | 583412 | 662344 | 2 |
| Inversion | Chr4 | 3167959 | 4157205 | 2 |
| Inversion | Chr4 | 3167969 | 4155597 | LOC_Os04g06100 |
| Inversion | Chr9 | 13239282 | 13365607 | 2 |
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 9306293 | Chr3 | 19340992 | 2 |
| Translocation | Chr11 | 12833650 | Chr5 | 4754789 | |
| Translocation | Chr11 | 12834238 | Chr5 | 4754764 | |
| Translocation | Chr10 | 18345193 | Chr3 | 19836123 | 2 |
| Translocation | Chr10 | 18360383 | Chr3 | 19836111 | 2 |
| Translocation | Chr10 | 18360408 | Chr4 | 23051272 | |
| Translocation | Chr6 | 19283438 | Chr1 | 17779578 | 2 |