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Mutant Information

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8113181	C-T	HET
SBS	Chr1	12522338	C-T	HET
SBS	Chr1	12818190	C-T	Homo
SBS	Chr1	42783316	A-G	Homo
SBS	Chr2	9978346	G-A	HET
SBS	Chr2	34469466	G-A	Homo
SBS	Chr3	8763986	G-C	HET
SBS	Chr3	12171836	A-T	HET
SBS	Chr3	14872144	C-T	Homo
SBS	Chr3	31934337	C-T	Homo
SBS	Chr4	3444022	G-A	Homo
SBS	Chr4	10438485	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g18770
SBS	Chr4	14520980	C-T	Homo
SBS	Chr4	22157492	C-T	Homo
SBS	Chr4	27127547	C-A	HET
SBS	Chr5	2363551	C-T	HET
SBS	Chr5	15237200	A-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g26180
SBS	Chr7	13672517	G-A	HET
SBS	Chr7	16635614	G-A	HET
SBS	Chr8	1524068	C-T	Homo
SBS	Chr9	1678299	C-G	HET
SBS	Chr9	9006346	T-C	HET
SBS	Chr9	20205966	C-T	HET
SBS	Chr9	20265840	G-T	HET
SBS	Chr10	15824395	T-A	HET
SBS	Chr10	18159399	T-A	HET
SBS	Chr10	18210815	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g34120
SBS	Chr11	13143695	G-A	HET
SBS	Chr11	20807447	A-T	HET
SBS	Chr11	28860513	G-A	HET
SBS	Chr12	1664294	A-G	HET
SBS	Chr12	7937441	C-T	HET
SBS	Chr12	11889645	C-A	HET
SBS	Chr12	20681373	C-T	HET
SBS	Chr12	23308386	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os12g37939
SBS	Chr12	25871599	G-T	HET

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	385586	385598	12
Deletion	Chr6	1298545	1298547	2
Deletion	Chr8	1408920	1408926	6
Deletion	Chr5	1787615	1787625	10
Deletion	Chr11	4620878	4620885	7	LOC_Os11g08660
Deletion	Chr1	8544237	8544238	1
Deletion	Chr3	9185269	9185274	5
Deletion	Chr4	9848734	9848740	6
Deletion	Chr3	11522641	11522642	1
Deletion	Chr5	16649648	16649666	18
Deletion	Chr9	18682342	18682344	2
Deletion	Chr3	21776121	21776124	3	LOC_Os03g39210
Deletion	Chr4	22591209	22591217	8
Deletion	Chr3	24251328	24251330	2	LOC_Os03g43470
Deletion	Chr5	29891083	29891437	354
Deletion	Chr4	33409623	33409633	10	LOC_Os04g56090

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	12078673	12078692	20

Inversions: 8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	10398219	10400892	2
Inversion	Chr5	10398220	10400894	2
Inversion	Chr3	11417106	11487244
Inversion	Chr1	14935433	14966170	2
Inversion	Chr1	14936872	14966203	2
Inversion	Chr9	22488364	22493068	2
Inversion	Chr9	22488433	22493104	2
Inversion	Chr1	31136580	31199463	LOC_Os01g54140

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	1612432	Chr5	15682773	2
Translocation	Chr9	4161428	Chr8	6664978
Translocation	Chr2	8579206	Chr1	31199469
Translocation	Chr2	8582566	Chr1	31136612	2
Translocation	Chr3	11169112	Chr2	34566126
Translocation	Chr5	20754910	Chr3	11417125
Translocation	Chr5	20756122	Chr3	14880498	2

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