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| Mutant Information |
|---|
| Mutant Name | FN3561-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3561-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 20
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 29212528 | G-A | Homo | ||
| SBS | Chr10 | 12609843 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os10g24560 |
| SBS | Chr10 | 14614513 | G-A | HET | ||
| SBS | Chr10 | 21347166 | A-G | Homo | ||
| SBS | Chr11 | 23494313 | C-T | Homo | ||
| SBS | Chr12 | 16543656 | G-T | Homo | ||
| SBS | Chr4 | 18282028 | T-C | Homo | ||
| SBS | Chr4 | 23150509 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os04g38970 |
| SBS | Chr4 | 28498661 | C-T | Homo | ||
| SBS | Chr5 | 14821482 | G-A | Homo | ||
| SBS | Chr5 | 29098332 | G-A | HET | ||
| SBS | Chr6 | 14585171 | A-T | HET | ||
| SBS | Chr6 | 17232684 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g29920 |
| SBS | Chr6 | 27907587 | T-C | HET | ||
| SBS | Chr6 | 9937273 | G-A | HET | ||
| SBS | Chr7 | 27969520 | T-C | HET | ||
| SBS | Chr7 | 2894475 | C-T | Homo | ||
| SBS | Chr7 | 8182843 | A-T | Homo | ||
| SBS | Chr8 | 3661018 | A-T | HET | ||
| SBS | Chr9 | 8020977 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os09g13710 |
Deletions: 20
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr2 | 132315 | 132322 | 7 | |
| Deletion | Chr3 | 1259507 | 1259511 | 4 | LOC_Os03g03050 |
| Deletion | Chr7 | 2894535 | 2894536 | 1 | |
| Deletion | Chr9 | 3971580 | 3971581 | 1 | |
| Deletion | Chr8 | 6049627 | 6049635 | 8 | |
| Deletion | Chr2 | 6443415 | 6443418 | 3 | LOC_Os02g12370 |
| Deletion | Chr4 | 6458949 | 6458954 | 5 | |
| Deletion | Chr7 | 9207574 | 9207579 | 5 | |
| Deletion | Chr12 | 10991397 | 10991415 | 18 | LOC_Os12g18940 |
| Deletion | Chr10 | 11908448 | 11908449 | 1 | |
| Deletion | Chr1 | 14053360 | 14053376 | 16 | LOC_Os01g24940 |
| Deletion | Chr3 | 14266196 | 14266199 | 3 | |
| Deletion | Chr3 | 15788200 | 15788201 | 1 | LOC_Os03g27520 |
| Deletion | Chr10 | 15991795 | 15991813 | 18 | |
| Deletion | Chr4 | 16621018 | 16621025 | 7 | |
| Deletion | Chr1 | 18467001 | 18489000 | 21999 | 3 |
| Deletion | Chr7 | 20187600 | 20187601 | 1 | |
| Deletion | Chr6 | 25383921 | 25383924 | 3 | |
| Deletion | Chr5 | 27461503 | 27461511 | 8 | LOC_Os05g47890 |
| Deletion | Chr3 | 30923709 | 30923839 | 130 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr3 | 15138760 | 15138771 | 12 | LOC_Os03g26510 |
| Insertion | Chr3 | 30819947 | 30819948 | 2 | |
| Insertion | Chr8 | 11334305 | 11334341 | 37 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr11 | 4550626 | 4550776 | LOC_Os11g08569 |
| Inversion | Chr3 | 12415794 | 12416251 |
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 1241762 | Chr1 | 39841277 | |
| Translocation | Chr11 | 13220593 | Chr5 | 29713108 | |
| Translocation | Chr2 | 13466916 | Chr1 | 18469092 | |
| Translocation | Chr5 | 29609963 | Chr2 | 16008945 | 2 |
| Translocation | Chr5 | 29610271 | Chr2 | 15993584 | 2 |