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Mutant Information

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	29306232	T-C	HET
SBS	Chr1	9909673	C-T	HET
SBS	Chr10	3058105	G-A	HET
SBS	Chr10	8937440	A-G	HET
SBS	Chr11	5790864	G-A	HET
SBS	Chr12	1956254	G-A	HET
SBS	Chr2	14449446	G-A	Homo
SBS	Chr2	14488302	G-A	HET
SBS	Chr2	17906736	G-T	HET
SBS	Chr2	23003383	G-A	HET
SBS	Chr2	4546159	T-A	Homo
SBS	Chr3	27847319	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g48904
SBS	Chr3	27847320	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g48904
SBS	Chr3	27847326	G-A	Homo	SPLICE_SITE_DONOR	LOC_Os03g48904
SBS	Chr3	27847327	T-A	Homo	SPLICE_SITE_DONOR	LOC_Os03g48904
SBS	Chr3	35477253	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g62690
SBS	Chr4	10264900	C-T	HET
SBS	Chr4	1434283	T-C	HET
SBS	Chr4	21037370	G-A	HET
SBS	Chr5	17227409	A-T	HET
SBS	Chr5	5580721	T-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g10260
SBS	Chr6	10672833	G-A	HET
SBS	Chr6	9214333	T-C	HET
SBS	Chr7	25499808	T-A	HET
SBS	Chr7	25499809	T-A	HET
SBS	Chr7	6727098	G-A	HET
SBS	Chr8	11236832	A-G	Homo
SBS	Chr8	15214874	C-T	Homo
SBS	Chr8	1692514	A-T	HET
SBS	Chr8	24324801	C-T	HET
SBS	Chr8	2853428	A-G	HET
SBS	Chr9	16861204	C-T	Homo

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	2700745	2700746	1
Deletion	Chr11	5341190	5341191	1
Deletion	Chr2	10357986	10357989	3
Deletion	Chr11	12792500	12792517	17	LOC_Os11g22310
Deletion	Chr11	17279126	17279127	1
Deletion	Chr6	19777320	19777322	2
Deletion	Chr3	20174001	20333000	158999	25
Deletion	Chr3	20341001	20430000	88999	12
Deletion	Chr5	23514860	23514862	2
Deletion	Chr11	24242268	24242288	20
Deletion	Chr8	25325126	25325137	11
Deletion	Chr2	26470001	26489000	18999	3
Deletion	Chr3	27366436	27366438	2
Deletion	Chr3	27893838	27893857	19	LOC_Os03g48970
Deletion	Chr3	28306047	28306056	9
Deletion	Chr2	30156181	30156187	6
Deletion	Chr1	30404341	30404342	1

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	12528896	12528896	1
Insertion	Chr12	11575371	11575371	1
Insertion	Chr12	17835352	17835355	4
Insertion	Chr6	20298219	20298222	4
Insertion	Chr6	26597810	26597811	2
Insertion	Chr8	12420123	12420123	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	115543	198039	LOC_Os12g01200
Inversion	Chr8	10552650	10898692
Inversion	Chr8	10552665	10898704
Inversion	Chr2	33500574	33501029

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	359467	Chr1	7547434	2
Translocation	Chr8	28195395	Chr5	15082064	2
Translocation	Chr11	28929298	Chr4	22603805

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