Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN3563-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3563-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 35
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 15838575 | A-T | Homo | ||
| SBS | Chr1 | 16961997 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g31020 |
| SBS | Chr1 | 28701302 | T-C | HET | ||
| SBS | Chr1 | 39550367 | A-T | HET | ||
| SBS | Chr10 | 10562287 | G-A | HET | ||
| SBS | Chr10 | 12020049 | T-A | HET | ||
| SBS | Chr10 | 12020050 | T-A | HET | ||
| SBS | Chr10 | 22165739 | T-C | HET | ||
| SBS | Chr10 | 6853236 | C-A | HET | ||
| SBS | Chr11 | 20129660 | A-G | HET | ||
| SBS | Chr12 | 11676679 | C-T | HET | ||
| SBS | Chr12 | 2777324 | G-A | Homo | ||
| SBS | Chr2 | 25040427 | G-A | HET | ||
| SBS | Chr3 | 22803447 | G-T | HET | ||
| SBS | Chr3 | 27074742 | G-T | Homo | ||
| SBS | Chr3 | 31027072 | A-T | HET | ||
| SBS | Chr4 | 17349534 | C-T | HET | ||
| SBS | Chr4 | 25014462 | A-C | HET | ||
| SBS | Chr4 | 25014480 | G-A | HET | ||
| SBS | Chr4 | 3096471 | G-C | Homo | ||
| SBS | Chr4 | 3579072 | G-A | Homo | ||
| SBS | Chr5 | 5154448 | C-A | Homo | ||
| SBS | Chr5 | 6179547 | G-T | Homo | ||
| SBS | Chr6 | 11067735 | C-T | Homo | ||
| SBS | Chr6 | 20951378 | A-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os06g35910 |
| SBS | Chr6 | 7724725 | C-T | HET | ||
| SBS | Chr7 | 16800170 | G-T | Homo | ||
| SBS | Chr7 | 17999618 | T-C | HET | ||
| SBS | Chr8 | 12803875 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os08g21480 |
| SBS | Chr8 | 17598255 | G-A | HET | ||
| SBS | Chr8 | 19520755 | A-G | HET | ||
| SBS | Chr8 | 7170581 | C-T | HET | ||
| SBS | Chr9 | 17076374 | G-A | Homo | ||
| SBS | Chr9 | 17685975 | A-T | HET | ||
| SBS | Chr9 | 20655804 | G-A | Homo |
Deletions: 21
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 634283 | 634286 | 3 | |
| Deletion | Chr12 | 1321216 | 1321223 | 7 | |
| Deletion | Chr10 | 3049099 | 3049105 | 6 | LOC_Os10g06010 |
| Deletion | Chr6 | 6653800 | 6653808 | 8 | |
| Deletion | Chr3 | 6868019 | 6868023 | 4 | |
| Deletion | Chr7 | 8407965 | 8407973 | 8 | |
| Deletion | Chr3 | 10017864 | 10017866 | 2 | |
| Deletion | Chr5 | 12389726 | 12389727 | 1 | |
| Deletion | Chr7 | 12537407 | 12537414 | 7 | |
| Deletion | Chr11 | 12760984 | 12760992 | 8 | |
| Deletion | Chr3 | 15549529 | 15549531 | 2 | |
| Deletion | Chr12 | 16729550 | 16729574 | 24 | LOC_Os12g28290 |
| Deletion | Chr3 | 18114546 | 18114555 | 9 | |
| Deletion | Chr9 | 20319768 | 20319775 | 7 | LOC_Os09g34860 |
| Deletion | Chr12 | 20424671 | 20424691 | 20 | |
| Deletion | Chr3 | 23118466 | 23118474 | 8 | |
| Deletion | Chr1 | 25095736 | 25095737 | 1 | |
| Deletion | Chr12 | 25773389 | 25773394 | 5 | |
| Deletion | Chr1 | 26340760 | 26340768 | 8 | |
| Deletion | Chr6 | 31098602 | 31098608 | 6 | |
| Deletion | Chr6 | 31102291 | 31102297 | 6 |
Insertions: 5
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr9 | 12343351 | 12343780 | |
| Inversion | Chr10 | 18044705 | 18125115 | |
| Inversion | Chr10 | 18044710 | 18125116 |
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr4 | 392633 | Chr2 | 17921317 | 2 |
| Translocation | Chr8 | 4091618 | Chr7 | 16953421 | 2 |
| Translocation | Chr4 | 9394680 | Chr3 | 19296602 | |
| Translocation | Chr12 | 19030375 | Chr11 | 28433553 | 2 |
| Translocation | Chr7 | 20898146 | Chr6 | 10042624 |