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Mutant Information

Variant Information

Single base substitutions: 41

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5004743	C-T	HET
SBS	Chr1	6058526	C-T	HET
SBS	Chr1	6058527	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g11300
SBS	Chr1	7668607	A-C	HET
SBS	Chr1	10858673	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g19190
SBS	Chr1	24389579	A-T	HET
SBS	Chr1	24397332	T-A	HET
SBS	Chr1	24397333	A-T	HET
SBS	Chr1	33165636	G-C	Homo
SBS	Chr2	16371377	C-T	HET
SBS	Chr3	7881323	A-C	Homo
SBS	Chr3	23042012	G-A	HET
SBS	Chr3	28124398	A-G	HET
SBS	Chr3	31963539	C-T	HET
SBS	Chr4	5709717	T-G	HET
SBS	Chr4	12547651	C-A	HET
SBS	Chr4	15937864	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g26940
SBS	Chr4	18899222	G-T	HET
SBS	Chr4	19950274	G-T	Homo
SBS	Chr4	29380342	A-T	HET
SBS	Chr5	10219489	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g17780
SBS	Chr5	13102503	T-G	HET
SBS	Chr5	29776453	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g51890
SBS	Chr6	5420727	C-T	HET
SBS	Chr7	4411655	A-T	HET
SBS	Chr7	4998650	C-T	HET
SBS	Chr7	6894587	C-T	HET
SBS	Chr7	10682045	A-T	HET
SBS	Chr7	28479262	T-G	Homo
SBS	Chr8	1037257	T-C	HET
SBS	Chr8	9484637	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g15610
SBS	Chr10	3978938	C-G	Homo
SBS	Chr10	12206886	T-C	HET
SBS	Chr10	16637009	C-T	HET
SBS	Chr10	18474711	A-G	HET
SBS	Chr10	19987204	G-T	HET
SBS	Chr11	1358010	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os11g03510
SBS	Chr11	2326007	C-T	Homo
SBS	Chr11	3949472	G-C	Homo
SBS	Chr12	7236857	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g13030
SBS	Chr12	27207326	C-A	HET

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	414016	414035	19
Deletion	Chr7	4686934	4686935	1	LOC_Os07g09000
Deletion	Chr7	4961001	4987000	25999	6
Deletion	Chr9	6039860	6039881	21	LOC_Os09g10960
Deletion	Chr8	6339422	6339427	5
Deletion	Chr5	6683215	6683226	11
Deletion	Chr12	6784257	6784258	1
Deletion	Chr8	7449336	7449344	8
Deletion	Chr5	8884872	8884883	11	LOC_Os05g15720
Deletion	Chr3	9074989	9074991	2	LOC_Os03g16450
Deletion	Chr8	9484812	9484815	3	LOC_Os08g15610
Deletion	Chr4	11663448	11663451	3	LOC_Os04g20790
Deletion	Chr3	11666633	11666636	3
Deletion	Chr4	12111001	12147000	35999	5
Deletion	Chr4	12892001	13296000	403999	51
Deletion	Chr8	13161677	13161694	17
Deletion	Chr3	13393001	13430000	36999	3
Deletion	Chr2	13641254	13641409	155
Deletion	Chr5	18987591	18987593	2
Deletion	Chr2	20280340	20280350	10
Deletion	Chr3	23660906	23660908	2
Deletion	Chr1	24409241	24409261	20	LOC_Os01g42900
Deletion	Chr4	25818962	25818963	1
Deletion	Chr4	27959258	27959259	1
Deletion	Chr7	28250481	28250491	10
Deletion	Chr1	32658328	32658329	1

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	35770112	35770113	2
Insertion	Chr2	20280421	20280421	1
Insertion	Chr7	26050219	26050224	6
Insertion	Chr1	34047786	34047786	1
Insertion	Chr3	21960582	21960599	18
Insertion	Chr6	31526	31527	2
Insertion	Chr11	27121659	27121698	40

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	3886393	3908396	2
Inversion	Chr10	3886413	3908435	2

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	512989	Chr3	19927156
Translocation	Chr3	13586553	Chr1	37809771
Translocation	Chr8	19117960	Chr3	13463548	2
Translocation	Chr6	22853265	Chr1	33907213	2
Translocation	Chr11	26960166	Chr5	27709523	LOC_Os11g44590

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