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Mutant Information

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18039249	T-A	HET
SBS	Chr1	18039251	G-T	HET
SBS	Chr1	9587067	A-T	HET
SBS	Chr10	9491293	C-T	HET
SBS	Chr11	19322758	G-A	HET
SBS	Chr12	12385798	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g22020
SBS	Chr12	5073169	A-G	HET
SBS	Chr2	10585808	T-C	Homo
SBS	Chr2	16222546	T-C	Homo
SBS	Chr2	3653919	C-G	Homo
SBS	Chr2	9665048	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os02g16950
SBS	Chr3	26165478	C-A	HET
SBS	Chr3	34949871	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g61660
SBS	Chr3	6522078	G-A	HET
SBS	Chr4	50727	C-T	HET
SBS	Chr4	5359564	C-T	HET
SBS	Chr4	8274775	C-A	HET
SBS	Chr5	13454900	A-G	Homo
SBS	Chr5	17492182	C-T	HET
SBS	Chr6	27245186	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g45030
SBS	Chr6	9264319	G-A	HET
SBS	Chr7	17815049	T-C	Homo
SBS	Chr7	23123904	G-A	HET
SBS	Chr9	14644820	C-T	HET
SBS	Chr9	15185098	A-G	HET
SBS	Chr9	17860384	A-C	HET

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	1398810	1398825	15
Deletion	Chr3	2569022	2569028	6
Deletion	Chr4	6072352	6072353	1
Deletion	Chr4	6999411	6999420	9
Deletion	Chr4	7577793	7577794	1	LOC_Os04g13560
Deletion	Chr10	7741653	7741661	8	LOC_Os10g14295
Deletion	Chr4	7960864	7960865	1
Deletion	Chr3	12639999	12640011	12
Deletion	Chr12	14491537	14491538	1
Deletion	Chr10	18280731	18280732	1
Deletion	Chr4	18793001	18831000	37999	6
Deletion	Chr10	19534417	19534435	18
Deletion	Chr8	20796925	20796936	11
Deletion	Chr12	21015428	21015429	1
Deletion	Chr2	22231938	22231939	1
Deletion	Chr4	29102050	29102059	9
Deletion	Chr1	33986494	33986495	1

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr4	30663451	30663451	1
Insertion	Chr7	17555480	17555481	2
Insertion	Chr8	25127247	25127267	21
Insertion	Chr8	6443584	6443610	27

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	8704297	8852596
Inversion	Chr2	8704307	8852600
Inversion	Chr1	19413959	19433006
Inversion	Chr8	24035775	24036142	LOC_Os08g37950
Inversion	Chr3	35089806	35579403	LOC_Os03g61890
Inversion	Chr3	35089808	35579404	LOC_Os03g61890

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	8650949	Chr7	28608712	2
Translocation	Chr12	10166262	Chr4	8994569	2
Translocation	Chr12	18521684	Chr9	1654381	LOC_Os12g30824
Translocation	Chr8	20167778	Chr7	1780280	2
Translocation	Chr6	21336973	Chr4	20208700
Translocation	Chr6	23465790	Chr4	20897001

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