Search Results
Mutant Information |
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Mutant Name | FN360-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN360-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Phenotype |
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Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 24
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
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SBS | Chr1 | 8876792 | T-C | HET | INTERGENIC | |
SBS | Chr1 | 10501045 | T-C | HET | INTERGENIC | |
SBS | Chr2 | 9002613 | C-A | HOMO | INTERGENIC | |
SBS | Chr2 | 27985321 | G-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os02g45920 |
SBS | Chr3 | 36359524 | C-T | HET | INTERGENIC | |
SBS | Chr4 | 5500183 | A-G | HET | INTERGENIC | |
SBS | Chr4 | 7564461 | T-C | HET | INTRON | |
SBS | Chr4 | 18850047 | A-C | HET | INTRON | |
SBS | Chr4 | 23449414 | A-T | HET | INTERGENIC | |
SBS | Chr5 | 1684994 | T-A | HET | INTERGENIC | |
SBS | Chr5 | 1684999 | G-T | HET | INTERGENIC | |
SBS | Chr6 | 26059377 | G-T | HET | INTERGENIC | |
SBS | Chr6 | 30080483 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g49720 |
SBS | Chr7 | 10541425 | A-G | HET | INTERGENIC | |
SBS | Chr7 | 11315069 | G-A | HET | INTERGENIC | |
SBS | Chr10 | 2280063 | G-A | HET | INTERGENIC | |
SBS | Chr10 | 13330774 | G-A | HET | INTERGENIC | |
SBS | Chr10 | 17861258 | T-C | HET | SYNONYMOUS_CODING | |
SBS | Chr11 | 5309233 | G-A | HET | SYNONYMOUS_CODING | |
SBS | Chr11 | 18543042 | C-T | HET | INTERGENIC | |
SBS | Chr11 | 24746867 | T-G | HET | INTRON | |
SBS | Chr12 | 7378007 | G-A | HET | INTRON | |
SBS | Chr12 | 7378010 | T-G | HET | INTRON | |
SBS | Chr12 | 13692407 | G-T | HET | INTERGENIC |
Deletions: 14
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
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Deletion | Chr9 | 3524060 | 3524083 | 23 | |
Deletion | Chr9 | 3530500 | 3530510 | 10 | |
Deletion | Chr2 | 4331603 | 4331626 | 23 | |
Deletion | Chr6 | 4759547 | 4759551 | 4 | |
Deletion | Chr10 | 5246249 | 5246253 | 4 | |
Deletion | Chr1 | 7985169 | 7985175 | 6 | |
Deletion | Chr4 | 8496263 | 8496267 | 4 | |
Deletion | Chr4 | 10158058 | 10158064 | 6 | |
Deletion | Chr3 | 17368296 | 17368965 | 669 | |
Deletion | Chr2 | 17749127 | 17749135 | 8 | |
Deletion | Chr1 | 25561347 | 25561351 | 4 | LOC_Os01g45030 |
Deletion | Chr5 | 26189698 | 26189718 | 20 | LOC_Os05g45070 |
Deletion | Chr1 | 27224684 | 27224691 | 7 | |
Deletion | Chr1 | 28421814 | 28421816 | 2 |
No Insertion
Inversions: 1
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr2 | 3124683 | 3630485 | 2 |
Translocations: 1
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
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Translocation | Chr3 | 17368949 | Chr1 | 2592444 | 2 |