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Mutant Information

Mutant Name	FN360-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN360-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Low (Between 25% and 74%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 24

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10501045	T-C	HET	INTERGENIC
SBS	Chr1	8876792	T-C	HET	INTERGENIC
SBS	Chr10	13330774	G-A	HET	INTERGENIC
SBS	Chr10	17861258	T-C	HET	SYNONYMOUS_CODING
SBS	Chr10	2280063	G-A	HET	INTERGENIC
SBS	Chr11	18543042	C-T	HET	INTERGENIC
SBS	Chr11	24746867	T-G	HET	INTRON
SBS	Chr11	5309233	G-A	HET	SYNONYMOUS_CODING
SBS	Chr12	13692407	G-T	HET	INTERGENIC
SBS	Chr12	7378007	G-A	HET	INTRON
SBS	Chr12	7378010	T-G	HET	INTRON
SBS	Chr2	27985321	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g45920
SBS	Chr2	9002613	C-A	HOMO	INTERGENIC
SBS	Chr3	36359524	C-T	HET	INTERGENIC
SBS	Chr4	18850047	A-C	HET	INTRON
SBS	Chr4	23449414	A-T	HET	INTERGENIC
SBS	Chr4	5500183	A-G	HET	INTERGENIC
SBS	Chr4	7564461	T-C	HET	INTRON
SBS	Chr5	1684994	T-A	HET	INTERGENIC
SBS	Chr5	1684999	G-T	HET	INTERGENIC
SBS	Chr6	26059377	G-T	HET	INTERGENIC
SBS	Chr6	30080483	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g49720
SBS	Chr7	10541425	A-G	HET	INTERGENIC
SBS	Chr7	11315069	G-A	HET	INTERGENIC

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	3524060	3524083	23
Deletion	Chr9	3530500	3530510	10
Deletion	Chr2	4331603	4331626	23
Deletion	Chr6	4759547	4759551	4
Deletion	Chr10	5246249	5246253	4
Deletion	Chr1	7985169	7985175	6
Deletion	Chr4	8496263	8496267	4
Deletion	Chr4	10158058	10158064	6
Deletion	Chr3	17368296	17368965	669
Deletion	Chr2	17749127	17749135	8
Deletion	Chr1	25561347	25561351	4	LOC_Os01g45030
Deletion	Chr5	26189698	26189718	20	LOC_Os05g45070
Deletion	Chr1	27224684	27224691	7
Deletion	Chr1	28421814	28421816	2

No Insertion

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	3124683	3630485	2

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	17368949	Chr1	2592444	2

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